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waldronlab / MultiAssayExperiment

Bioconductor package for management of multi-assay data
https://waldronlab.io/MultiAssayExperiment/
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Error = All sample identifiers in the assays must be unique #318

Closed jfertaj closed 1 year ago

jfertaj commented 1 year ago

Hello,

I am trying to create a MultiassayExperiment using two experiments (RNAseq and Proteomics). Both experiments are in matrix format. The sampleMap file has no duplicates for RNAseq assay neither the Proteomics assay, but when running MultiAssayExperiment I get the following error:

"All sample identifiers in the assays must be unique"

I can't attach the files because they are protected

Thanks

LiNk-NY commented 1 year ago

Hi @jfertaj Can you provide a minimally reproducible example with fake data? Please include the version of MultiAssayExperiment and Bioconductor with the report using sessionInfo().

Note. It sounds like you have duplicate columns in one particular assay. Please check the names in each assay for uniqueness.

Best, Marcel

stale[bot] commented 1 year ago

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