Closed drighelli closed 1 year ago
Hi @drighelli - sorry for the delay! I've checked the G&T papers and it seems that there are no cell type labels available for the Mouse embryo dataset. Do you intend to annotate them computationally eg based on their scRNA-seq profile? This might be a bit of a far shot given that this annotation is not provided by the authors.
Thanks @lgeistlinger, I don't think it's a good idea to assign cell labels to the dataset by ourselves, in particular if we want to define a ground truth.
we reported the already existing cell types and annotated the CITEseq dataset with a manual gating.
We also exported two functions for manual gating getCellGroups
and addCTlabels
, an example of usage can be seen in the scripts/CITEseq_celltypes.R
file
It seems that we have some already annotated datasets, such as:
on the other hand annotation is missing for:
@lgeistlinger