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waldronlab / SingleCellMultiModal

Single Cell multimodal data scripts for downloading datasets
https://bioconductor.org/packages/SingleCellMultiModal
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document colData #6

Closed lwaldron closed 1 year ago

lwaldron commented 4 years ago

What do the colData columns and values mean?

> colData(mae)
DataFrame with 826 rows and 3 columns
                       stage     lineage10x_2         stage_lineage
                 <character>      <character>           <character>
E7.5_Plate1_A3          E7.5         Endoderm         E7.5_Endoderm
E7.5_Plate1_H3          E7.5         Endoderm         E7.5_Endoderm
E7.5_Plate1_D2          E7.5         Endoderm         E7.5_Endoderm
E7.5_Plate1_D7          E7.5         Endoderm         E7.5_Endoderm
E7.5_Plate1_F5          E7.5         Endoderm         E7.5_Endoderm
...                      ...              ...                   ...
PS_VE_Plate9_C11        E6.5         Epiblast         E6.5_Epiblast
PS_VE_Plate9_E11        E6.5         Epiblast         E6.5_Epiblast
PS_VE_Plate9_D11        E6.5 Primitive_Streak E6.5_Primitive_Streak
PS_VE_Plate9_A11        E6.5 Primitive_Streak E6.5_Primitive_Streak
PS_VE_Plate9_B11        E6.5         Mesoderm         E6.5_Mesoderm