the function .CITEseqMaeToSce in CITEseq.R file has a few issues:
doesn't return metadata for peripheral_blood dataset
doesn't add the new clr counts to the altExps of ADTs for cord_blood dataset
it can be written by thinking in a more general way where each assay of the MAE is a SCE that can be combined as main and altExps assays in the new SCE returned object
the function
.CITEseqMaeToSce
inCITEseq.R
file has a few issues:metadata
forperipheral_blood
datasetclr counts
to thealtExps
ofADTs
forcord_blood
datasetaltExps
assays in the new SCE returned object