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waldronlab / TCGAutils

Toolbox package for organizing and working with TCGA data
https://bioconductor.org/packages/TCGAutils
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incorrect argument matching #15

Closed lwaldron closed 5 years ago

lwaldron commented 6 years ago 
suppressPackageStartupMessages(library(TCGAutils))
fullBarcodes <- c("TCGA-B0-5117-11A-01D-1421-08",
                  "TCGA-B0-5094-11A-01D-1421-08",
                  "TCGA-E9-A295-10A-01D-A16D-09")
barcodeToUUID(fullBarcodes, id_type = c("case_id", "file_id"))
#>   submitter_id                              case_id
#> 1 TCGA-B0-5117 ae55b2d3-62a1-419e-9f9a-5ddfac356db4
#> 2 TCGA-B0-5094 8aaa4e25-5c12-4ace-96dc-91aaa0c4457c
#> 3 TCGA-E9-A295 fec0da58-1047-44d2-b6d1-c18cceed43dc
barcodeToUUID(fullBarcodes, id_type = c("file_id", "case_id"))
#> Error in match.arg(id_type): 'arg' must be of length 1
LiNk-NY commented 5 years ago

This has been resolved after re-working the barcodeToUUID function.