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waldronlab / TCGAutils

Toolbox package for organizing and working with TCGA data
https://bioconductor.org/packages/TCGAutils
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getBroadSubtypes #6

Closed lgeistlinger closed 6 years ago

lgeistlinger commented 6 years ago

If you want to make use of the functionality that I've written on getting expression-based subtypes for a specified cancer type - check the getBroadSubtypes function in here:

https://github.com/waldronlab/subtypeHeterogeneity/blob/master/R/setup_subtype_clonality.R

Feel free to use/modify/extend it in your way or prompt modifications or in case you would like to init a pull request.

LiNk-NY commented 6 years ago

Thanks Ludwig, @lgeistlinger

This was added to the RTCGAToolbox which is good for download all sorts of TCGA data. See it here: mksamur/RTCGAToolbox@1fd0b0f63087a60b1fc1a32d6b4095275c536e45

Regards, Marcel