standard enrichment workflow

[lwaldron]

We need somewhere a simple vignette documenting recommended standard enrichment workflows using bugsigdb. It could include:

1. (lower priority): data preparation from a couple of the most popular Bioinformatics pipelines
2. differential abundance analysis
3. creating a table of enrichment analysis results

Some simple code should be a high priority so we can use this code (at least 2-3) as the basis for a Shiny app that we would like to have ready in time for manuscript publication.

[lwaldron]

Concept for bugsigdb (+ eventually bugphyzz?) enrichment analysis web interface:

DAVID-like interface to paste in a list of bugs

• one NCBI taxid or name per row
• dropdown to choose DB version
• how many results to show or significance threshold
• body site to use as background, with backgrounds?
• download CSV file of complete results

[lgeistlinger]

We need somewhere a simple vignette documenting recommended standard enrichment workflows using bugsigdb.

This would be best wrapped within a new workflow package.

Concept for bugsigdb (+ eventually bugphyzz?) enrichment analysis web interface

This sounds like an issue for bugsigdb.org. Should we move the discussion there?