search

waldronlab / cBioPortalData

Integrate the cancer genomics portal, cBioPortal, using MultiAssayExperiment
https://waldronlab.io/cBioPortalData/
30 stars 12 forks source link

prioritization request for angs_project_painter_2018 #32

Closed lwaldron closed 3 years ago

lwaldron commented 4 years ago 
angs <- cBioDataPack("angs_project_painter_2018")
...
Error in .find_with_xfix(df_colnames, prefixes1, prefixes2, start.field,  : 
  'start.field' and 'end.field' prefixes do not match
LiNk-NY commented 4 years ago

similarly..

cBioDataPack("brca_mbcproject_wagle_2017")
[...]
Error in .find_with_xfix(df_colnames, prefixes1, prefixes2, start.field,  : 
  'start.field' and 'end.field' prefixes do not match
LiNk-NY commented 3 years ago

This should be resolved here: https://github.com/mksamur/RTCGAToolbox/commit/824c39419cc7416ff4771763d68a0a5977ebb435