Closed ZheFrench closed 3 years ago
On Ubuntu 18.04, and R 4.1 got this weird error about "no lock available". Any idea ?
library(cBioPortalData) api.cbio <- cBioPortal( hostname = "www.cbioportal.org",protocol = "https") cancer <- cBioPortalData(api = api.cbio, genePanelId = "genes", by = "hugoGeneSymbol", studyId = "brca_tcga", molecularProfileIds = c( "brca_tcga_mrna"))
Erreur dans lock(.sql_lock_path(dbfile)) : Cannot lock file: '/home/villemin/.cache/R/cBioPortalData/BiocFileCache.sqlite.LOCK': Aucun verrou disponible Appels : cBioPortalData ... tryCatch -> tryCatchList -> .sql_connect_RW -> lock Erreur dans h(simpleError(msg, call)) : erreur d'�valuation de l'argument 'conn' lors de la s�lection d'une m�thode pour la fonction 'dbDisconnect' : objet 'info' introuvable Appels : cBioPortalData ... .sql_disconnect -> dbDisconnect -> .handleSimpleError -> h Exécution arrêtée
On Ubuntu 18.04, and R 4.1 got this weird error about "no lock available". Any idea ?