waldronlab / cBioPortalData

Integrate the cancer genomics portal, cBioPortal, using MultiAssayExperiment
https://waldronlab.io/cBioPortalData/
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compatibility with paediatric cBio? #49

Closed andrea-de-micheli closed 2 years ago

andrea-de-micheli commented 2 years ago

Hello,

I'm trying to access the data on the paediatric cBioPortal (https://pedcbioportal.kidsfirstdrc.org) using the following API address: https://pedcbioportal.kidsfirstdrc.org/api/swagger-ui.html

While I can create a cBioPortal instance, methods such as getStudies() and clinicalData() return me errors.

Is the code compatible with the paediatric cBioPortal database?

Many thanks, Andrea

LiNk-NY commented 2 years ago

Hi Andrea, @andrea-de-micheli Please see the answer here: https://groups.google.com/g/cbioportal/c/VteZnY5C6mM/m/0GatSYyuAwAJ Make sure you have version 2.7.7 of cBioPortalData. Best, Marcel

andrea-de-micheli commented 2 years ago

Thank you very much!

On 31 Jan 2022, at 21:25, Marcel Ramos @.***> wrote:

Hi Andrea, Please see the answer here: https://groups.google.com/g/cbioportal/c/VteZnY5C6mM/m/0GatSYyuAwAJ https://groups.google.com/g/cbioportal/c/VteZnY5C6mM/m/0GatSYyuAwAJ — Reply to this email directly, view it on GitHub https://github.com/waldronlab/cBioPortalData/issues/49#issuecomment-1026176610, or unsubscribe https://github.com/notifications/unsubscribe-auth/AGRARET2IQHZ2V5KIZVVQK3UY3VZ7ANCNFSM5NG6WZNQ. Triage notifications on the go with GitHub Mobile for iOS https://apps.apple.com/app/apple-store/id1477376905?ct=notification-email&mt=8&pt=524675 or Android https://play.google.com/store/apps/details?id=com.github.android&referrer=utm_campaign%3Dnotification-email%26utm_medium%3Demail%26utm_source%3Dgithub. You are receiving this because you authored the thread.

LiNk-NY commented 2 years ago

Please feel free to reopen, if there are still any difficulties. Thanks!