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waldronlab / cBioPortalData

Integrate the cancer genomics portal, cBioPortal, using MultiAssayExperiment
https://waldronlab.io/cBioPortalData/
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getStudies, Cases, Clinicaldata, mRNA, Mutation #54

Closed kmezhoud closed 2 years ago

kmezhoud commented 2 years ago

Update of cgdsMigration.Rmd file

LiNk-NY commented 2 years ago

Hi Karim, @kmezhoud Thank you for making those changes! It's looking good. Best, Marcel

LiNk-NY commented 2 years ago

Thanks again! I've merged the changes and made some updates. I had to resolve a lot of conflicting files in the merge. Hopefully I did it right. Best, Marcel

kmezhoud commented 2 years ago

Dear Marcel, @LiNk-NY If you want I can add sections for Methylation and CNA. It seems the same format than mRNA , just user needs to change the right molecularProfileIds. Karim

LiNk-NY commented 2 years ago

Hi Karim, @kmezhoud You can if you'd like. Make sure you are working off the latest devel branch to avoid messy merges. :) I've fixed the commit history as best I could. Best regards, Marcel