API changes?

[denoqo]

Hello,

It seems the cBioPortal() keeps failing to connect to cBioportal. Wondering if it is just a temporary thing?

> cbio <- cBioPortal()
Error: '.service_validate_md5sum' failed:
  Not Found (HTTP 404).

Thank you for your help!

[Package cBioPortalData version 2.8.1 [R 4.2.0]

[denoqo]

Ok, I think cbiportal changed their API.

Below worked for me:

cbio = cBioPortalData::cBioPortal(
  hostname = "www.cbioportal.org",
  protocol = "https",
  api. = "/v3/api-docs/public",  # update here
  token = character()
)

Ref: https://www.cbioportal.org/swagger-ui/index.html?urls.primaryName=public

[LiNk-NY]

Hi @denoqo Thank you for reporting. I will take a look.

[LiNk-NY]

cBioPortal has changed to new V3 API. It will take a bit longer to update cBioPortalData to the new API. Apologies for the delay.

[LiNk-NY]

Update: The cBioPortal team has decided to keep the V2 API at the same location and publish the V3 API at a new URL. This will allow all tools using the old URL to keep working. That means it will keep working as before so you should no longer see the errors. Thanks!

[denoqo]

Thank you so much!

On Fri, Jan 12, 2024 at 2:04 PM Marcel Ramos @.***> wrote:

Update: The cBioPortal team has decided to keep the V2 API at the same location and publish the V3 API at a new URL. This will allow all tools using the old URL to keep working. That means it will keep working as before so you should no longer see the errors. Thanks!

— Reply to this email directly, view it on GitHub https://github.com/waldronlab/cBioPortalData/issues/75#issuecomment-1889883661, or unsubscribe https://github.com/notifications/unsubscribe-auth/AKR3JCLMXYM74DZHJUE5QWDYOGJMRAVCNFSM6AAAAABBVEPZAOVHI2DSMVQWIX3LMV43OSLTON2WKQ3PNVWWK3TUHMYTQOBZHA4DGNRWGE . You are receiving this because you were mentioned.Message ID: @.***>