retrieve raw data

[bfebles]

Hi, Is there a way to get the raw metagenomics fastq files from the listed studies?

[lwaldron]

Hi @bfebles - The curation files under https://github.com/waldronlab/curatedMetagenomicDataCuration/tree/master/inst/curated, or the sampleMetadata object provided by the curatedMetagenomicData package, have a column called NCBI_accession that can be used to download the fastq files when they're publicly available.

[bfebles]

Great. Thank you @lwaldron