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waldronlab / curatedMetagenomicDataCuration

Sample Metadata Curation for curatedMetagenomicData
https://waldronlab.io/curatedMetagenomicDataCuration/
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data dictionary #20

Open lwaldron opened 6 years ago

lwaldron commented 6 years ago

Create a formal data dictionary as a table with the following columns:

  1. variable name
  2. definition of variable (from template.csv "description")
  3. variable value
  4. definition of variable value
  5. link to ontological term (look on https://www.ebi.ac.uk/ols/index)

Key variables to find ontological terms for. Make sure the terms for a single variable come from a single ontology:

@sdavis and @vjcitn comments?

lwaldron commented 3 years ago

Should be done along with #26 . @ftzohra22

lwaldron commented 3 years ago

See field definitions on issue #18.

lwaldron commented 2 years ago

This could be added to the ontology maps, so that the original terms are included as aliases. https://github.com/waldronlab/curatedMetagenomicDataCuration/commit/422dfd9535e809739949f88790c0eb5b81a1a78c