Closed edoardopasolli closed 6 years ago
@schifferl I assume this is occurring in the R pipeline - can you identify why?
@lwaldron I had another look at the template.csv
file and some of the curation files, as well as the R
pipeline – the cause of this issue is not readily apparent. I think it is likely due to changes that have happened over time and would be resolved in running the entire pipeline again. @edoardopasolli is there a specific dataset you are referring to?
most of the datasets are currently affected by this problem
Since this is not a curation issue and has no identifiable cause I am going to close the issue. I know it is still an issue but it will be resolved with a unit test that checks the final data in the package against the curated metadata here (https://github.com/waldronlab/curatedMetagenomicData/issues/109).
"number_bases" and "median_read_length" fields have been fixed for all datasets. this issue can be closed definitevely.
in the "number_bases" and "median_read_length" fields some samples have "NA"