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waldronlab / curatedMetagenomicDataCuration

Sample Metadata Curation for curatedMetagenomicData
https://waldronlab.io/curatedMetagenomicDataCuration/
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write data/combined_metadata.rda #44

Closed lwaldron closed 3 years ago

lwaldron commented 3 years ago
  1. Use the makeCombinedMetadata now in this package
  2. Call this function in the GitHub Action, use save(compression_level="bzip2") to write to data/combined_metadata.rda, and push back to this repo
jwokaty commented 3 years ago

@cmirzayi How should I call your function? I get the following when I try calling your function:

> combined_metadata <- curatedMetagenomicDataCuration:::makeCombinedMetadata()
Error in fetchTSVs() : could not find function "fetchTSVs"

Is there a way to call it such that it recognizes the '.' prefixed functions?

cmirzayi commented 3 years ago

Whoops @jwokaty it should be fixed now.

lwaldron commented 3 years ago

There should be no more action necessary here, see https://github.com/waldronlab/curatedMetagenomicData/issues/174. Will close for now.

Whoops @jwokaty it should be fixed now.

BTW @cmirzayi it's useful to reference the hash of the commit of the fix, to make it easier to see how you did it, e.g.: 18c504cdc1b331ecfa58776cc3e195512c8c251e