Closed mruehlemann closed 10 months ago
@paolinomanghi can you look into this?
Hi @mruehlemann , sorry for the long absence, and thanks for pointing this error out! So, I confirm there was an issue: after filtering out the metagenomic samples from the original table the number of days between timepoints do not much exactly anymore the correct day span, or at least this is what I think. Using the sampling date, this should be solved.
An amended version has been pushed now. I'm closing this, as seems correct now. Thanks
Hi,
I think there some of the values in the days_from_first_collection variable are incorrect in the HMP_2019_ibdmdb study. When comparing the values in the curatedMetagenomicData package and the sampling dates obtained from the corresponding QIITA dataset (https://qiita.ucsd.edu/study/description/11484), the numbers don't fit, e.g. see below for subject_id == M2048