search

waldronlab / curatedTCGAData

Curated Data From The Cancer Genome Atlas (TCGA) as MultiAssayExperiment Objects
https://bioconductor.org/packages/curatedTCGAData
44 stars 7 forks source link

No internet localHub fallback #36

Closed LiNk-NY closed 4 years ago

LiNk-NY commented 4 years ago

Based on Slack discussion: (from Vince @vjcitn)

Vince Carey  -- 4:42
x = curatedTCGAData("ACC", "RNASeq2GeneNorm", localHub=TRUE, dry.run=FALSE) will work if you have acquired that assay on that tumor in the past and have not cleaned your cache in the mean time.
Vince Carey  -- 4:42
It might be nice to have a failover component ... if hub request fails, retry with localHub=TRUE @mramos148?
LiNk-NY commented 4 years ago

See abfbfe3