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waldronlab / curatedTCGAData

Curated Data From The Cancer Genome Atlas (TCGA) as MultiAssayExperiment Objects
https://bioconductor.org/packages/curatedTCGAData
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RNASeq2Gene values #54

Closed nargessn closed 1 year ago

nargessn commented 1 year ago

Hi and thanks for the very practical package.

I have been using it to download RNAseq2Gene values for some TCGA cohorts. Based on the manual, this should include RSEM TPM values. With TPM, I would expect library sizes to add up to 1 million per sample but this is not the case for dataset I checked (SKCM). Does RNAseq2Gene implies something else or am I somehow misunderstood here?

Thanks for the help in advance! Narges

LiNk-NY commented 1 year ago

See #53