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waldronlab / lefser

R implementation of the LEfSe method
https://waldronlab.io/lefser/
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Comparison of more than two groups #17

Open anapopov opened 3 years ago

anapopov commented 3 years ago

Hi! Great to be able to run LefSe in R - thanks! The R implementation doesn't seem to allow a comparison of more than two groups. Is there a plan to add this functionality?

cafferychen777 commented 1 year ago

I have a piece of code to achieve a two-by-two comparison between the levels of lefse when there are >2 levels in the group, you can try my code. They are in the import and Revised parts of pdf. sample data.zip