Closed J5886 closed 3 months ago
@J5886 It sounds like you have the same values across groups in a grouping variable e.g., "Treatment". In order to better assist you, could you provide a minimally reproducible example? https://stackoverflow.com/a/5963610/6558242 Thank you.
@J5886 It sounds like you have the same values across groups in a grouping variable e.g., "Treatment". In order to better assist you, could you provide a minimally reproducible example? https://stackoverflow.com/a/5963610/6558242 Thank you.
Hi @LiNk-NY, thanks for your rapid response and assistance,
@J5886 this issue should be resolved in recent versions of lefser - please try again and let us know if it persists.
@J5886 this issue should be resolved in recent versions of lefser - please try again and let us know if it persists.
Hi @lwaldron thanks for letting me know. Regards!
Hello,
I'm using the lefser package with HUMAnN3 pathways output,
I created a phyloseq object and then converted it to a tse object to run Lefser, but i got this erorr
res <- lefser(tse_lefobj, groupCol = "Treatment")
Error in lda.default(x, grouping, ...) : variables 3 12 18 29 64 96 112 appear to be constant within groups
Could you please tell me, what should I do to fix it?
Thank you in advance