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waldronlab / lefser

R implementation of the LEfSe method
https://waldronlab.io/lefser/
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Make this run faster #38

Open shbrief opened 2 months ago

shbrief commented 2 months ago

Rewrite the apply-within-apply part? https://github.com/waldronlab/lefser/blob/b059a6213aed225116e1b62e155280f7d8de60bb/R/lefser.R#L24-L32

lwaldron commented 2 weeks ago

As Jenny Bryan would say, it has a bad code "smell"