waldronlab / lefser

R implementation of the LEfSe method
https://waldronlab.io/lefser/
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add support for multiple hypothesis testing adjustment #39

Closed lwaldron closed 2 weeks ago

lwaldron commented 3 weeks ago

Add method="none" as a default argument that is passed to stats::p.adjust, so that the default remains no adjustment but the user can change to any type of adjustment supported by p.adjust. It would only require about an additional line of code following the wilcox and KW tests.