Taxids repeated in both node and tip data in LTP tree import

waldronlab / taxPPro

https://waldronlab.io/taxPPro/

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Taxids repeated in both node and tip data in LTP tree import #8

Closed sdgamboa closed 11 months ago

sdgamboa commented 11 months ago

Some species and strains are both in tip and node data. Find out the reason. Some genera are expected as well after adding genus data as additional tips. Find a way to resolve this for these three ranks.

sdgamboa commented 11 months ago

Maybe apply some kind of filter with slice_max, so if they are in the tips, don't take values from the nodes. Tip data should have come from source annotations.

sdgamboa commented 11 months ago

Solved by 69f18bb123a81c8bf9a9255d4bb3b92e2cda7992 and 0254a9cb296ff1d13e1da4738a0410fe7e803f5d