search

wanderine / BROCCOLI

BROCCOLI: Software for Fast fMRI Analysis on Many-Core CPUs and GPUs
GNU General Public License v3.0
113 stars 38 forks source link

BROCOLLI crashes without error #37

Open chrisgorgo opened 7 years ago

chrisgorgo commented 7 years ago

on ds000009 R2.0.1 - sub-29

docker run -ti -v D:\:/d bids/broccoli:v1.0.1 /d/data/ds000009_R2.0.1/ /d/scratch/broccoli participant --participant_label 29
Running the BIDS validator for the dataset
        1: Not all subjects/sessions/runs have the same scanning parameters. (code: 39 - INCONSISTENT_PARAMETERS)
                /sub-01/func/sub-01_task-balloonanalogrisktask_bold.nii.gz
                /sub-02/func/sub-02_task-balloonanalogrisktask_bold.nii.gz
                /sub-03/func/sub-03_task-balloonanalogrisktask_bold.nii.gz
                /sub-04/func/sub-04_task-balloonanalogrisktask_bold.nii.gz
                /sub-05/dwi/sub-05_dwi.nii.gz
                /sub-06/func/sub-06_task-balloonanalogrisktask_bold.nii.gz
                /sub-07/func/sub-07_task-balloonanalogrisktask_bold.nii.gz
                /sub-09/func/sub-09_task-balloonanalogrisktask_bold.nii.gz
                /sub-10/func/sub-10_task-balloonanalogrisktask_bold.nii.gz
                /sub-11/func/sub-11_task-balloonanalogrisktask_bold.nii.gz
                ... and 14 more files having this issue (Use --verbose to see them all).

        Summary:                 Available Tasks:                Available Modalities:
        855 Files, 6.07GB        discounting                     T1w
        24 - Subjects            balloon analog risk task        inplaneT2
        1 - Session              emotional regulation            dwi
                                 stop signal                     bold

Doing first level analysis

bids_dir is /d/data/ds000009_R2.0.1/, output_dir is /d/scratch/broccoli, analysis type is participant, participants are 29

Task names are

balloonanalogrisktask
discounting
emotionalregulation
stopsignal

Analyzing subject sub-29

Analyzing subject sub-29 task balloonanalogrisktask

Number of runs is 1

Creating '/d/scratch/broccoli/sub-29/balloonanalogrisktask/cond_run1_BALOON.txt'...

BROCOLLI exist with a non-zero exit code without producing the expected analysis outputs.