wandreopoulos
commented
7 months ago the files you request are from ncbi refseq. It is possible to download the full bac and archaea files from ncbi. https://www.ncbi.nlm.nih.gov/refseq/
On Mon, Dec 4, 2023 at 12:47 AM a-piece-of-teemo @.***> wrote:
Hi, I would like to use your dataset to perform different length cuts. Therefore, could you provide the uncut version of the file "archaea.txt.fasta.MIN1kMAX330k.fasta" and its corresponding annotation file from the training data on your website https://portal.nersc.gov/dna/microbial/assembly/deeplasmid/DATA/TRAIN/? Additionally, could you also provide the annotation file corresponding to "refseq.bacteria.nonplasmid.nonmito.fasta.subsam40kreads.fasta"?
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-- Thanks, Bill
William B. Andreopoulos, Ph.D. Joint Genome Institute LBNL
Hi, I would like to use your dataset to perform different length cuts. Therefore, could you provide the uncut version of the file "archaea.txt.fasta.MIN1kMAX330k.fasta" and its corresponding annotation file from the training data on your website https://portal.nersc.gov/dna/microbial/assembly/deeplasmid/DATA/TRAIN/? Additionally, could you also provide the annotation file corresponding to "refseq.bacteria.nonplasmid.nonmito.fasta.subsam40kreads.fasta"?