Closed lainnorton closed 2 years ago
Hi,
Thanks for asking!
Could you try first git clone https://github.com/wanglab-broad/ClusterMap.git
to download the package locally, then cd ClusterMap
and pip install -e.
?
For the environment, I added a .yml file so you can use conda env create -f environment.yml
to create a good environment named ClusterMap
with required packages.
Thanks!
Hi,
Thanks for asking!
Could you try first
git clone https://github.com/wanglab-broad/ClusterMap.git
to download the package locally, thencd ClusterMap
andpip install -e.
?For the environment, I added a .yml file so you can use
conda env create -f environment.yml
to create a good environment namedClusterMap
with required packages. Thanks!
Hi @heihaizhengdong
Thanks for the reply! Through this way, I successfully installed ClusterMap and imported.
Thanks!
Hi @heihaizhengdong , I'm installing ClusterMap on my Windows10 computer following your instruction. But I got a long list of ResolvePackageNotFound
error after typing conda env create -f environment.yml
. I've tried to solve this problem by moving the problematic dependencies from dependencies
to pip
. So the environment is successfully created. However, I still can't import the modules that i need in Clustermap. Any recommendations?
@rocketeer1998 Yeah, I had the same error on Linux. After some digging, I found that the provided yml only works for Mac since it specifies the platform-specific build versions. See: https://stackoverflow.com/questions/55554431/conda-fails-to-create-environment-from-yml/55576493#55576493
Basically, removing the "=hddfnxxx" should fix it.
I am trying to install ClusterMap on HPC(CentOS) using this trick, but the system still failed to install, a lot of conflicting packages....Any clues to solve it? Thanks a lot!
Basically, removing the "=hddfnxxx" should fix it.
Hi authors,
I tried to use
pip install git+https://github.com/LiuLab-Bioelectronics-Harvard/ClusterMap.git
to install, but it showed "Command errored out with exit status 128".I changed "git+https" to "git+git". This time it could be downloaded successfully, but the site-packages folder only contained "ClusterMap-0.0.1.dist-info", which cannot be imported.
I finally tried to use
git clone
and used the commandpython setup.py install
to install. But it showed "warning: install_lib:'build/lib' does not exist - no Python modules to install".What should I do to successfully install ClusterMap?