Closed rocketeer1998 closed 2 years ago
Hi, Thanks for asking! For installation please refer to the post here: https://github.com/wanglab-broad/ClusterMap/issues/1#issuecomment-999330366 For test run on test data, please refer to two jupyter notebooks here and here.
Hi, Thanks for asking! For installation please refer to the post here: #1 (comment) For test run on test data, please refer to two jupyter notebooks here and here.
OK. Thank you! I'll give it a try and go back to you later.
Hi @heihaizhengdong , I'm installing ClusterMap on my Windows10 computer following your instruction. But I got a long list of ResolvePackageNotFound
error after typing conda env create -f environment.yml
. I've tried to solve this problem by moving the problematic dependencies from dependencies
to pip
in environment.yml
file. So the environment is successfully created. However, I still can't import the modules that i need in Clustermap. Any recommendations?
Hi @heihaizhengdong , I'm installing ClusterMap on my Windows10 computer following your instruction. But I got a long list of
ResolvePackageNotFound
error after typingconda env create -f environment.yml
. I've tried to solve this problem by moving the problematic dependencies fromdependencies
topip
inenvironment.yml
file. So the environment is successfully created. However, I still can't import the modules that i need in Clustermap. Any recommendations?
Solved it for now. And I can import all the modules included in STARmap_human_cardiac_organoid
vignette correctly. But I didn't create a new environment in the way which is illustrated above because there were so many "packages conflicts".
Hi,
Sorry for the late reply. Glad to see the problem was solved!
Hi @heihaizhengdong Thanks for your excellent work! And I'd like to use clustermap to analyze my ISS data. However, I'm totally a beginner in python. So could you provide a more detailed vignette on the module installation, and a test run using test data? Thanks!