Export clustermap object

wanglab-broad / ClusterMap

ClusterMap for multi-scale clustering analysis of spatial gene expression

GNU General Public License v3.0

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Export clustermap object #7

Closed rocketeer1998 closed 2 years ago

rocketeer1998 commented 2 years ago

Hi @heihaizhengdong, how can I export the clustermap object produced by clustermap pipeline? Can I export it as a pickle file? Any other recommendations?

yichunher commented 2 years ago

Hi, thanks for asking! self.spots can be saved by model.save_segmentation(path_save) now. The clustermap object cannot be exported right now so other information may need to be saved individually.

rocketeer1998 commented 2 years ago

Thank you! I'm hoping to see the release of a detailed description about clustermap object. Thanks for your contribution.