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wanglab-broad / ClusterMap

ClusterMap for multi-scale clustering analysis of spatial gene expression
GNU General Public License v3.0
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optimization of segmentation #9

Open WeissShahaf opened 1 year ago

WeissShahaf commented 1 year ago

Hi, i we are using very large images, and i noticed that the slowest part seems to be the segmentation. i also noticed only 1/2 cores are being utilized through the pipeline.

any chance to optimize / parallelize either this part or the looping through tiles?

thanks Shahaf

yichunher commented 1 year ago

Hi, We are currently working on optimizing a second version and will notify you as soon as it becomes available. Thanks, Yichun