write brief summary interpreting mummerplot and evaluating Canu assembly quality
The assemble results have linearised the circular chromosome in different places, we see that all are consistent with the reference. Because Ecoli is circular DNA, it has a random mapping start point, so it has breakage in the assemble result.
record link to evaluation script
https://github.com/wangna62691/PacBio_Assembly.git
record exact command used to submit job,
record GitHub revision of script used,
https://github.com/wangna62691/PacBio_Assembly/blob/720b9d62c06db1425f1cdd1c7a0f8ff9e9409f40/PacBio_assemble
check in the mummerplot & report.tsv
write brief summary interpreting mummerplot and evaluating Canu assembly quality
The assemble results have linearised the circular chromosome in different places, we see that all are consistent with the reference. Because Ecoli is circular DNA, it has a random mapping start point, so it has breakage in the assemble result.