unable to build on RHEL 6.3

wanpinglee / MOSAIK

reference-guided aligner for next-generation sequencing technologies

http://code.google.com/p/mosaik-aligner/

55 stars 19 forks source link

Open map2085 opened 9 years ago

map2085 commented 9 years ago

During the linking stage, MOSAIK fails to build when trying to link the zlib library:

Building in MosaikBuild
- compiling BuildMain.cpp
- compiling MosaikBuild.cpp
- linking MosaikBuild /usr/bin/ld: cannot find -lz collect2: error: ld returned 1 exit status make[1]: * [MosaikBuild] Error 1 make: * [all] Error 1

messersc commented 8 years ago

Make sure that you remove "-static" from includes/linux.inc

This should work:

# define our processor specific flags
export PLATFORM_FLAGS = -D_FILE_OFFSET_BITS=64
#export PLATFORM_FLAGS = -D_FILE_OFFSET_BITS=64 -static