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warelab
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gramene-mongodb
Gramene's MongoDB. ETL code
MIT License
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index for location query (map, region, start, end)
#76
ajo2995
closed
3 months ago
0
sorghum_v7
#75
ajo2995
closed
8 months ago
0
grapevine_v4
#74
ajo2995
closed
9 months ago
0
Main68
#73
ajo2995
closed
1 year ago
0
Oryza v7
#72
ajo2995
closed
1 year ago
0
Sorghum v6
#71
ajo2995
closed
1 year ago
0
Oryza v3 rerun
#70
ajo2995
closed
2 years ago
0
Rice pangenome3
#69
ajo2995
closed
2 years ago
0
updates for sorghum_v2
#68
ajo2995
closed
3 years ago
0
Bump mongodb from 2.2.36 to 3.6.1
#67
dependabot[bot]
closed
2 years ago
1
Panther protein classifications
#66
ajo2995
opened
5 years ago
0
review gene tree internal node annotation code
#65
ajo2995
opened
5 years ago
0
Release59
#64
ajo2995
closed
5 years ago
0
flatten tree in db
#63
ajo2995
opened
6 years ago
2
collect the taxon ids of duplication nodes
#62
ajo2995
closed
7 years ago
0
Reactome api update
#61
ajo2995
closed
7 years ago
0
Release55
#60
ajo2995
closed
7 years ago
0
associate duplication nodes to genes
#59
ajo2995
opened
7 years ago
0
update taxon_id in gene trees for subspecies
#58
ajo2995
opened
7 years ago
0
add display_name to maps collection
#57
ajo2995
opened
7 years ago
0
Release52
#56
ajo2995
closed
7 years ago
0
Dev
#55
ajo2995
closed
8 years ago
0
Release51
#54
ajo2995
closed
8 years ago
0
Evidence code
#53
ajo2995
closed
8 years ago
0
Proposal: Refactor taxon/location information.
#52
mycrobe
opened
8 years ago
0
Add exon boundaries to gene tree
#51
ajo2995
closed
8 years ago
0
GO/PO evidence codes fixes #48
#50
ajo2995
closed
8 years ago
0
ancestors fields should only be in solr docs
#49
ajo2995
closed
7 years ago
0
add GO/PO evidence codes to genes docs
#48
ajo2995
closed
8 years ago
0
bring in cyc pathways
#47
ajo2995
opened
8 years ago
0
many homologs are missing in v50 genes
#46
ajo2995
closed
8 years ago
0
Taxonomy subsets
#45
ajo2995
closed
8 years ago
0
Get species tree and taxonomy from compara
#44
ajo2995
closed
8 years ago
0
Non zm4 changes
#43
ajo2995
closed
8 years ago
0
Use compara as source for species taxonomy information
#42
mycrobe
closed
8 years ago
3
No simple way to map system_name to species name
#41
mycrobe
closed
8 years ago
1
tweak representative gene scoring
#40
ajo2995
closed
8 years ago
0
Get Curator Summaries from AraPort.
#39
mycrobe
closed
8 years ago
2
import TAIR curator summaries
#38
ajo2995
closed
8 years ago
1
remove empty homology fields
#37
ajo2995
closed
8 years ago
1
Update homology document
#36
mycrobe
closed
8 years ago
3
TCM_006793 does not have domain root specified.
#35
mycrobe
closed
8 years ago
1
Arrayify
#34
ajo2995
closed
8 years ago
0
Investigate using bagpipes for automation
#33
mycrobe
opened
8 years ago
0
Rename indexCommands.js
#32
mycrobe
closed
8 years ago
0
Exons and Transcripts should be in an array instead of an object
#31
mycrobe
closed
8 years ago
5
Taxonomy core should include full NCBI taxonomy
#30
mycrobe
closed
8 years ago
1
ontology alt_id entries are missing
#29
ajo2995
closed
8 years ago
0
add overlapping dna_align_feature labels to genes
#28
ajo2995
opened
8 years ago
2
add id_history field
#27
ajo2995
opened
8 years ago
3
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