"grid of blobs" after ts_reconstruct in WarpTools tutorial in spanish locale

[pconesa]

[pconesa]

To avoid double posting I close this. I've asked the same thing in the google group. Maybe someone else knows.

[alisterburt]

just tested and runnning fine here on the main branch

WarpTools ts_reconstruct \
> --settings warp_tiltseries.settings \
> --angpix 10 \
> --perdevice 4 \
> --output_processing recon_test

here is what the xml looks like for TS_1

TS_1.xml

let's track here - easier than the mailing list

[alisterburt]

my suspects would be

• something wrong with tilt series alignment data (did ts_aretomo or ts_etomo_* run ok?)
• something wrong with tilt series ctf data (did you run ts_ctf?)

[pconesa]

Yes, we run both, we also saw that TS_01.xml changed the shifts values from something reasonable after ts_etomo to something suspiciously wrong after ts_ctf.

Can paste the values but from "#.some decimals" values changes to "huge integers"

I'll ask my colleague to attach the files

[pconesa]

We will make a quick test... but it may be a "locale" issue...? Machine is in ES (Spanish)... maybe we lost the decimal places due to decimal separator being different.

[alisterburt]

That would make sense, we've had a couple of locale related bugs - thought we had squashed them all but there might be some left over

[pconesa]

Can confirm it was a locale (ES) issue.

[alisterburt]

Thanks for confirming @pconesa - will leave open so we know to look into/fix it ☺️