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wasserth / TotalSegmentator

Tool for robust segmentation of >100 important anatomical structures in CT and MR images
Apache License 2.0
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About DICOM Image Input #282

Open U-ma-s opened 4 months ago

U-ma-s commented 4 months ago

Thanks for the excellent work!

Beginner's question: I am trying to do a liver segmentation by inputting a CT image in DICOM format. Is it possible to input a file with a '.dcm' extension? Or is there a way to convert the '.dcm' files to the format in the 'reference_files/example_ct_dicom' folder?

wasserth commented 4 months ago

The input needs to be a complete 3d volume. A single .dcm file is only a single 2D slice. Therefore you need a folder with all the slices. This folder needs to be the input to TotalSegmentator.