Segment names not available in Slicer after command line segmentation

wasserth / TotalSegmentator

Tool for robust segmentation of >100 important anatomical structures in CT and MR images

Apache License 2.0

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Segment names not available in Slicer after command line segmentation #294

Closed lennart81 closed 1 month ago

lennart81 commented 5 months ago

Hi there,

I'm not sure if this is the best forum to add this but I would like to run segmentation on a linux server and review the files in slicer on a windows machine. Is it possible to have the organ names imported as well to 3D Slicer?

Thanks!

francescopisu commented 4 months ago

What do you mean by "organ names imported as well to 3D Slicer" ? Would you like to have the organ names instead of "Segment_1", "Segment_2" etc ?

lennart81 commented 1 month ago

yes exactly! I solved it by using a custom color table.

Is there a listing of all models and subsets?