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wasserth / TotalSegmentator

Tool for robust segmentation of >100 important anatomical structures in CT and MR images
Apache License 2.0
1.29k stars 215 forks source link

Modalities CT/MR and more structures ? #296

Open Peaceandmaths opened 2 months ago

Peaceandmaths commented 2 months ago

Two questions :

Thanks again for this tool !

kulsoom-abdullah commented 2 months ago

Two questions :

  • What should be done to adapt the TS to MRI scans in stead of CT ?
  • Could you add subcortical structures (thalamus, caudate, putamen, pallidum, hippocampus, amygdala, and nucleus accumbens) please ?

Thanks again for this tool !

I would also like to use the tool for MRI axial slices, at minimum to segment the vertebrae. I am trying out preprocessing of the MRI images to where the bones would be easier for the TS model to "see".

I can work with you and any others on this.

The TS tool is great! So far it has segmented the vertebrae on CT axial slices very well for our use case. @wasserth we appreciate your contribution to the community!

wasserth commented 1 month ago

We are currently working on adding support for MRI images and for subcortical structures. But it will take a bit more time.