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wasserth / TotalSegmentator

Tool for robust segmentation of >100 important anatomical structures in CT and MR images
Apache License 2.0
1.51k stars 248 forks source link

Correct Tasks / Task IDs #326

Open staniPetrox opened 4 months ago

staniPetrox commented 4 months ago

Hey,

I might oversee things here, but I can access some segmentations only when I do task=total or total_mr. E.g. brain is not visible as a task, however with total as the task flag, I suddenly see it. Why is that? Is there a way around this, because running all tasks all the time takes too long for my application.

All the best, Benedikt

wasserth commented 4 months ago

For the total task you can set the argument --roi_subset brain to only get the brain. This should also make it run faster.

lennart81 commented 3 months ago

Hi Jakob, it it possible to merge taks from 2 models? e.g. kidneys from total and left rightparotid glands from the new head neck model?

Awesome work!

Peaceandmaths commented 4 weeks ago

Maybe similar question, I would like to extract the brain with the skull ( both at the same time), how can I do that ?