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wasserth / TotalSegmentator

Tool for robust segmentation of >100 important anatomical structures in CT and MR images
Apache License 2.0
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Can 3D Slicer's TotalSegmentator segment total, body, appendicular bone, tissue types all at once? #341

Open dgcare opened 1 month ago

dgcare commented 1 month ago

Excellent AI assisted segmentation software. Thank you for sharing with us.

I am currently performing four segmentation tasks (total, body, appendicular bone, tissue types) sequentially in 3D Slicer. It takes around 20 minutes to segment all 4 tasks for a CT scan of 1200 slices.

Is it possible to perform all tasks simultaneously or automactically one task after another, so I don't need to wait for each task to complete and manually start the next one?

Thank you in advance.

My Config: 3D Slicer 5.7.0, RTX6000 ADA GPU on Windows 11, Torch 2.3.0+cu118

wasserth commented 1 month ago

In 3D Slicer this is not possible. You can run it directly on the command line without 3D Slicer and write your own Bash script to combine the calls. However, this requires a bit of coding.