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waterlandlab / CluBCpG

Cluster-based analysis of CpG methylation
https://clubcpg.readthedocs.io/
MIT License
11 stars 6 forks source link

very large log files #7

Closed cjgunase closed 4 years ago

cjgunase commented 4 years ago

Describe the bug I am seeing some unusually large logs are being reported when I run GLIA/NEURON data.

canthonyscott commented 4 years ago

I have found the offending logging calls and those will be updated in a future relase. For now, a workaround can be to edit the clubcpg-coverage file and edit line 79:

logging.basicConfig(filename=log_file, level=logging.DEBUG)

And set the level from logging.DEBUG to logging.INFO or higher (WARNING or higher if you really want to quiet it down). This should suppress the excessive logging.

canthonyscott commented 4 years ago

This has been fixed in the dev branch, and will be pulled into the next release