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waveygang / wfmash

base-accurate DNA sequence alignments using WFA and mashmap3
MIT License
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Convex BiWFA for pureWFA and patching #197

Closed AndreaGuarracino closed 6 months ago

AndreaGuarracino commented 1 year ago

Convex penalties allow better resolution of structural variants. We apply it only for patching, as it has a cost.

This replaces https://github.com/waveygang/wfmash/pull/145.