Kmer complexities were only averaged for the mergeMappings function, not the mergeMappingsInRange function. This bug doesn't impact any of the alignments, as the kmer-complexity filter is applied to segments before they are chained, but the reported kc tag is incorrect for chains.
Kmer complexities were only averaged for the
mergeMappingsfunction, not themergeMappingsInRangefunction. This bug doesn't impact any of the alignments, as the kmer-complexity filter is applied to segments before they are chained, but the reportedkctag is incorrect for chains.