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waveygang / wfmash

base-accurate DNA sequence alignments using WFA and mashmap2
MIT License
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Tune patching #228

Closed AndreaGuarracino closed 4 months ago

AndreaGuarracino commented 4 months ago

This reduces the number of failing patchings (less INS-DEL CIGAR strings) and changes the gap-opening penalty to get variant representations closer to what you get with other aligners.

AndreaGuarracino commented 4 months ago

Surpassed by https://github.com/waveygang/wfmash/pull/229