This makes a bunch of small changes required to use random access on a single query file, which may optionally be the target file during alignment. And it will also get rid of some intermediate processing steps, including mapping, sorting, that needs to happen because of the way we assumed that the query sequences would be organized in the input query files.
This makes a bunch of small changes required to use random access on a single query file, which may optionally be the target file during alignment. And it will also get rid of some intermediate processing steps, including mapping, sorting, that needs to happen because of the way we assumed that the query sequences would be organized in the input query files.