Illegal Instruction: wfmash:0.14.0 bioconda on linux container

[msgr0]

Hi! I'm having an issue with wfmash, I cannot run it all. Launching it gives me:

(test-env) msgro@devuan:~$ wfmash
Illegal instruction

I've tried installing it from bioconda since I need to run the nf-core/pangenome pipeline via conda/mamba (that was failing because of this same issue) My current environment is a x86/64 linux (tried latest ubunut and debian) container running on apple silicon via orb stack. Any clue of what this issue could be related to? Maybe some compilation flags in the release tar? Thanks in advance, Mattia

[ekg]

Can you run the v0.15.0 binary static build? It's attached to the release page.

On Tue, Jun 18, 2024, 17:24 Mattia Sgrò @.***> wrote:

Hi! I'm having an issue with wfmash, I cannot run it all. Launching it gives me:

(test-env) @.***:~$ wfmash Illegal instruction

I've tried installing it from bioconda since I need to run the nf-core/pangenome pipeline via conda/mamba (that was failing because of this same issue) My current environment is a x86/64 linux (tried latest ubunut and debian) container running on apple silicon via orb stack. Any clue of what this issue could be related to? Maybe some compilation flags in the release tar? Thanks in advance, Mattia

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[msgr0]

Same output on both cointainers, "Illegal Instruction"

[ekg]

Can you share your processor version and CPU flags?

I can set up a binary for more a genetic architecture.

On Wed, Jun 19, 2024, 02:11 Mattia Sgrò @.***> wrote:

Same output on both cointainers, "Illegal Instruction"

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[msgr0]

lscpu
Architecture:             x86_64
  CPU op-mode(s):         32-bit
  Byte Order:             Little Endian
CPU(s):                   6
  On-line CPU(s) list:    0-5
Vendor ID:                Apple
  Model name:             -
    Model:                0
    Thread(s) per core:   1
    Core(s) per socket:   6
    Socket(s):            1
    Stepping:             0x0
    CPU(s) scaling MHz:   100%
    CPU max MHz:          2000.0000
    CPU min MHz:          2000.0000
    BogoMIPS:             48.00
    Flags:                fp asimd evtstrm aes pmull sha1 sha2 crc32 atomics fphp asimdhp cp
                          uid asimdrdm jscvt fcma lrcpc dcpop sha3 asimddp sha512 asimdfhm d
                          it uscat ilrcpc flagm ssbs sb dcpodp flagm2 frint