Current Status: Jaccard Similarity compiles and runs. The eval function is fine. But when running an alignment the error "internal error: incrementally computed score (17.3318) is not correct (14.1204)" shows up. So there's a logic error in my implementation of incremental updates. So far I have not been able to figure out logic error. The logic in code makes sense to me, perhaps its an edge case I'm missing. I wouldn't push the wrong code but I didn't want all this code to be lost. Getting a second set of eyes to look at it might provide clues as to where the logic error is.
Current Status: Jaccard Similarity compiles and runs. The eval function is fine. But when running an alignment the error "internal error: incrementally computed score (17.3318) is not correct (14.1204)" shows up. So there's a logic error in my implementation of incremental updates. So far I have not been able to figure out logic error. The logic in code makes sense to me, perhaps its an edge case I'm missing. I wouldn't push the wrong code but I didn't want all this code to be lost. Getting a second set of eyes to look at it might provide clues as to where the logic error is.
Also added: A tutorial for adding new measures