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wbaopaul / scATAC-pro

A comprehensive tool for processing, analyzing and visulizing single cell chromatin accessibility sequencing data
MIT License
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Annotations for different genomes #56

Closed Gunjan-Dixit closed 1 year ago

Gunjan-Dixit commented 2 years ago

Hi, Can you advise how to generate or where to download the annotations for Drosophila (dm6) genome- Eg. dm6_promoters.bed and dm6.enhancers.bed

Thank you.

Regards, Gunjan

wbaopaul commented 2 years ago

I am not sure but maybe you can check out in this paper https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6203779/ If you are not specifically interested in the % of reads mapped to promoter or enhancer, you can skip this by running scATAC-pro (with a fake .bed file for each of these annotation files). Hope this helps!