wbaopaul scATAC-pro issues

wbaopaul / scATAC-pro

A comprehensive tool for processing, analyzing and visulizing single cell chromatin accessibility sequencing data

MIT License

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issues

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Mapping step error

#19 sidrahmaryam closed 4 years ago
3
Problem with Cell calling step

#18 JihedC closed 4 years ago
21
Pbmc analysis takes very long

#17 JihedC closed 4 years ago
2
Several Errors

#16 fkeramati closed 4 years ago
5
error in get_mtx

#15 JihedC closed 4 years ago
6
Merge pull request #1 from wbaopaul/master

#14 wbaopaul closed 4 years ago
1
clustering step fail

#13 henryhuang12345 closed 4 years ago
7
output/downstream_analysis/MACS2/FILTER/seurat_obj.rds', probable reason 'No such file or directory'

#12 yejg2017 closed 3 years ago
16
Input files error in the get_mtx step

#11 cflerin closed 4 years ago
4
scATAC.fragments.txt adjusted for 9bp overhang from Tn5?

#10 AnjaliC4 closed 4 years ago
2
Update README.md

#9 tanlabcode closed 4 years ago
0
peak calling macs2 for c. elegans

#8 lengfei5 closed 4 years ago
2
analyze species neither human nor mouse

#7 billzt closed 4 years ago
1
Duplicates not removed in positionsorted.MAPQ30.bam

#6 AnjaliC4 closed 4 years ago
2
Empty fragments.txt file @10xconvertbam

#5 AnjaliC4 closed 4 years ago
2
"Error in if (sum (dist_mat> distance_constraint) / 2 <1)" is reported when running runCicero

#4 lidenghui92 closed 4 years ago
13
Docker isn't working

#3 mvinyard closed 4 years ago
3
Annotation for mm10

#2 jonasungerback closed 4 years ago
4
Detailed explanation of how to prep the 10X generated fastqs from multiple samples/wells for scATAC-pro.

#1 jonasungerback closed 4 years ago
13