wdecoster / NanoPlot

Plotting scripts for long read sequencing data
http://nanoplot.bioinf.be
MIT License
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AttributeError: Unknown property height #103

Closed ghost closed 5 years ago

ghost commented 6 years ago

Hello

Here is my run command:

NanoPlot --fastq fastq_runid_fe24fa25f3bfad833de46efbd3e24c55dbeadf9e_0.fastq

I'm getting the follow error:

2018-10-22 13:05:04,128 NanoPlot 1.18.2 started with arguments Namespace(N50=False, alength=False, bam=None, barcoded=False, color='#4CB391', cram=None, downsample=None, dpi=100, drop_outliers=False, fasta=None, fastq=['fastq_runid_fe24fa25f3bfad833de46efbd3e24c55dbeadf9e_0.fastq'], fastq_minimal=None, fastq_rich=None, font_scale=1, format='png', listcolors=False, loglength=False, maxlength=None, minlength=None, minqual=None, no_N50=False, outdir='.', percentqual=False, pickle=None, plots=['kde', 'dot'], prefix='', raw=False, readtype='1D', runtime_until=None, store=False, summary=None, threads=4, title=None, verbose=False) 2018-10-22 13:05:04,129 Python version is: 3.6.5 |Anaconda, Inc.| (default, Apr 29 2018, 16:14:56) [GCC 7.2.0] 2018-10-22 13:05:04,507 Nanoplotter: valid output format png 2018-10-22 13:05:04,549 Nanoget: Starting to collect statistics from plain fastq file. 2018-10-22 13:05:50,488 Reduced DataFrame memory usage from 0.3752288818359375Mb to 0.250152587890625Mb 2018-10-22 13:05:50,501 Nanoget: Gathered all metrics of 16394 reads 2018-10-22 13:05:50,525 Calculated statistics 2018-10-22 13:05:50,525 Using sequenced read lengths for plotting. 2018-10-22 13:05:50,525 Processed the reads, optionally filtered. 16394 reads left 2018-10-22 13:05:50,526 Nanoplotter: Valid color #4CB391. 2018-10-22 13:05:50,526 Nanoplotter: Creating length plots for Read length. 2018-10-22 13:05:50,526 Nanoplotter: Using 16394 reads maximum of 116013bp. 2018-10-22 13:05:54,516 Created length plots 2018-10-22 13:05:54,516 Nanoplotter: Creating Read lengths vs Average read quality plots using statistics from 16394 reads. 2018-10-22 13:05:54,715 Unknown property height Traceback (most recent call last): File "/software/anaconda3/5.2.0b/lib/python3.6/site-packages/nanoplot/NanoPlot.py", line 92, in main plots = make_plots(datadf, settings) File "/software/anaconda3/5.2.0b/lib/python3.6/site-packages/nanoplot/NanoPlot.py", line 328, in make_plots plot_settings=plot_settings) File "/software/anaconda3/5.2.0b/lib/python3.6/site-packages/nanoplotter/nanoplotter_main.py", line 138, in scatter joint_kws={"s": 1}) File "/software/anaconda3/5.2.0b/lib/python3.6/site-packages/seaborn/axisgrid.py", line 2247, in jointplot grid.plot_joint(plt.scatter, joint_kws) File "/software/anaconda3/5.2.0b/lib/python3.6/site-packages/seaborn/axisgrid.py", line 1755, in plot_joint func(self.x, self.y, kwargs) File "/software/anaconda3/5.2.0b/lib/python3.6/site-packages/matplotlib/pyplot.py", line 3470, in scatter edgecolors=edgecolors, data=data, *kwargs) File "/software/anaconda3/5.2.0b/lib/python3.6/site-packages/matplotlib/init.py", line 1855, in inner return func(ax, args, **kwargs) File "/software/anaconda3/5.2.0b/lib/python3.6/site-packages/matplotlib/axes/_axes.py", line 4323, in scatter collection.update(kwargs) File "/software/anaconda3/5.2.0b/lib/python3.6/site-packages/matplotlib/artist.py", line 888, in update for k, v in props.items()] File "/software/anaconda3/5.2.0b/lib/python3.6/site-packages/matplotlib/artist.py", line 888, in for k, v in props.items()] File "/software/anaconda3/5.2.0b/lib/python3.6/site-packages/matplotlib/artist.py", line 881, in _update_property raise AttributeError('Unknown property %s' % k) AttributeError: Unknown property height

wdecoster commented 6 years ago

Duplicate of https://github.com/wdecoster/NanoPlot/issues/88

Please let me know if the proposed solution does not work.

wdecoster commented 5 years ago

Closing due to lack of response, please let me know if the issue persists.