wdecoster
commented
5 years ago Thanks for reporting, please share the log file too.
Closed tmmurtha closed 5 years ago
wdecoster
commented
5 years ago Thanks for reporting, please share the log file too.
tmmurtha
commented
5 years ago Sorry if this is not the correct file. I'm not very good at the computer aspect of sequencing, but I'm good at the benchtop stuff!
2019-03-01 08:17:31,795 NanoPlot 1.21.0 started with arguments Namespace(N50=False, alength=False, bam=None, barcoded=False, color='#4CB391', cram=None, downsample=None, dpi=100, drop_outliers=False, fasta=None, fastq=None, fastq_minimal=None, fastq_rich=None, font_scale=1, format='png', listcolors=False, loglength=False, maxlength=None, minlength=None, minqual=None, no_N50=False, outdir='.', percentqual=False, pickle=None, plots=['kde', 'dot'], prefix='', raw=False, readtype='1D', runtime_until=None, store=False, summary=['concatenated_summary.txt'], threads=4, title=None, verbose=False)
2019-03-01 08:17:31,795 Python version is: 3.5.6 |Anaconda, Inc.| (default, Aug 26 2018, 21:41:56) [GCC 7.3.0]
2019-03-01 08:17:31,797 Nanoplotter: valid output format png
2019-03-01 08:17:31,801 Nanoget: Collecting metrics from summary file concatenated_summary.txt for 1D sequencing
2019-03-01 08:17:34,799 Nanoget: Finished collecting statistics from summary file concatenated_summary.txt
2019-03-01 08:17:35,528 Reduced DataFrame memory usage from 445.01888942718506Mb to 228.1191873550415Mb
2019-03-01 08:17:36,575 Nanoget: Gathered all metrics of 1960656 reads
2019-03-01 08:17:36,716 index 0 is out of bounds for axis 0 with size 0
Traceback (most recent call last):
File "/home/grid/miniconda3/lib/python3.5/site-packages/nanoplot/NanoPlot.py", line 71, in main
settings["statsfile"] = [make_stats(datadf, settings, suffix="")]
File "/home/grid/miniconda3/lib/python3.5/site-packages/nanoplot/NanoPlot.py", line 280, in make_stats
outputfile=statsfile)
File "/home/grid/miniconda3/lib/python3.5/site-packages/nanomath/nanomath.py", line 135, in write_stats
stats = [Stats(df) for df in datadfs]
File "/home/grid/miniconda3/lib/python3.5/site-packages/nanomath/nanomath.py", line 135, in <listcomp>
stats = [Stats(df) for df in datadfs]
File "/home/grid/miniconda3/lib/python3.5/site-packages/nanomath/nanomath.py", line 35, in __init__
self.n50 = get_N50(np.sort(df["lengths"]))
File "/home/grid/miniconda3/lib/python3.5/site-packages/nanomath/nanomath.py", line 59, in get_N50
return readlengths[np.where(np.cumsum(readlengths) >= 0.5 * np.sum(readlengths))[0][0]]
IndexError: index 0 is out of bounds for axis 0 with size 0That's indeed the one! Do you think you could share the summary file which caused this error? You can find my email address on my profile.
tmmurtha
commented
5 years ago There are 245 summary files, how do I know which one caused the error? Would it work if I compress and email all of the summary files?
wdecoster
commented
5 years ago I see you used one summary file named concatenated_summary.txt?
How did you concatenate it, by the way?
Note that you can also use multiple summary files with NanoPlot:
NanoPlot --summary *.summary.txt which will take all files ending on .summary.txt in the current directory as input.
Summary files can also be gzipped for NanoPlot.
tmmurtha
commented
5 years ago I had issues with NanoPlot a few months back so I used: awk 'FNR>1 || NR==1' sequencing_summary*.txt > concatenated_summary.txt
This is the message that I get for the standard NanoPlot command:
grid@GXB01209:/data/basecalled/PT-16-16-9/GA30000$ NanoPlot --summary sequencing_summary*.txt
/home/grid/miniconda3/lib/python3.5/site-packages/numpy/lib/function_base.py:3250: RuntimeWarning: Invalid value encountered in median
r = func(a, **kwargs)
/home/grid/miniconda3/lib/python3.5/site-packages/nanomath/nanomath.py:59: RuntimeWarning: invalid value encountered in greater_equal
return readlengths[np.where(np.cumsum(readlengths) >= 0.5 * np.sum(readlengths))[0][0]]
If you read this then NanoPlot has crashed :-(
Please try updating NanoPlot and see if that helps...
If not, please report this issue at https://github.com/wdecoster/NanoPlot/issues
If you could include the log file that would be really helpful.
Thanks!
Traceback (most recent call last):
File "/home/grid/miniconda3/bin/NanoPlot", line 11, in <module>
sys.exit(main())
File "/home/grid/miniconda3/lib/python3.5/site-packages/nanoplot/NanoPlot.py", line 71, in main
settings["statsfile"] = [make_stats(datadf, settings, suffix="")]
File "/home/grid/miniconda3/lib/python3.5/site-packages/nanoplot/NanoPlot.py", line 280, in make_stats
outputfile=statsfile)
File "/home/grid/miniconda3/lib/python3.5/site-packages/nanomath/nanomath.py", line 135, in write_stats
stats = [Stats(df) for df in datadfs]
File "/home/grid/miniconda3/lib/python3.5/site-packages/nanomath/nanomath.py", line 135, in <listcomp>
stats = [Stats(df) for df in datadfs]
File "/home/grid/miniconda3/lib/python3.5/site-packages/nanomath/nanomath.py", line 35, in __init__
self.n50 = get_N50(np.sort(df["lengths"]))
File "/home/grid/miniconda3/lib/python3.5/site-packages/nanomath/nanomath.py", line 59, in get_N50
return readlengths[np.where(np.cumsum(readlengths) >= 0.5 * np.sum(readlengths))[0][0]]
IndexError: index 0 is out of bounds for axis 0 with size 0
grid@GXB01209:/data/basecalled/PT-16-16-9/GA30000$
2019-03-01 08:31:00,524 NanoPlot 1.21.0 started with arguments Namespace(N50=False, alength=False, bam=None, barcoded=False, color='#4CB391', cram=None, downsample=None, dpi=100, drop_outliers=False, fasta=None, fastq=None, fastq_minimal=None, fastq_rich=None, font_scale=1, format='png', listcolors=False, loglength=False, maxlength=None, minlength=None, minqual=None, no_N50=False, outdir='.', percentqual=False, pickle=None, plots=['kde', 'dot'], prefix='', raw=False, readtype='1D', runtime_until=None, store=False, summary=['sequencing_summary_0.txt', 'sequencing_summary_100.txt', 'sequencing_summary_101.txt', 'sequencing_summary_102.txt', 'sequencing_summary_103.txt', 'sequencing_summary_104.txt', 'sequencing_summary_105.txt', 'sequencing_summary_106.txt', 'sequencing_summary_107.txt', 'sequencing_summary_108.txt', 'sequencing_summary_109.txt', 'sequencing_summary_10.txt', 'sequencing_summary_110.txt', 'sequencing_summary_111.txt', 'sequencing_summary_112.txt', 'sequencing_summary_113.txt', 'sequencing_summary_114.txt', 'sequencing_summary_115.txt', 'sequencing_summary_116.txt', 'sequencing_summary_117.txt', 'sequencing_summary_118.txt', 'sequencing_summary_119.txt', 'sequencing_summary_11.txt', 'sequencing_summary_120.txt', 'sequencing_summary_121.txt', 'sequencing_summary_122.txt', 'sequencing_summary_123.txt', 'sequencing_summary_124.txt', 'sequencing_summary_125.txt', 'sequencing_summary_126.txt', 'sequencing_summary_127.txt', 'sequencing_summary_128.txt', 'sequencing_summary_129.txt', 'sequencing_summary_12.txt', 'sequencing_summary_130.txt', 'sequencing_summary_131.txt', 'sequencing_summary_132.txt', 'sequencing_summary_133.txt', 'sequencing_summary_134.txt', 'sequencing_summary_135.txt', 'sequencing_summary_136.txt', 'sequencing_summary_137.txt', 'sequencing_summary_138.txt', 'sequencing_summary_139.txt', 'sequencing_summary_13.txt', 'sequencing_summary_140.txt', 'sequencing_summary_141.txt', 'sequencing_summary_142.txt', 'sequencing_summary_143.txt', 'sequencing_summary_144.txt', 'sequencing_summary_145.txt', 'sequencing_summary_146.txt', 'sequencing_summary_147.txt', 'sequencing_summary_148.txt', 'sequencing_summary_149.txt', 'sequencing_summary_14.txt', 'sequencing_summary_150.txt', 'sequencing_summary_151.txt', 'sequencing_summary_152.txt', 'sequencing_summary_153.txt', 'sequencing_summary_154.txt', 'sequencing_summary_155.txt', 'sequencing_summary_156.txt', 'sequencing_summary_157.txt', 'sequencing_summary_158.txt', 'sequencing_summary_159.txt', 'sequencing_summary_15.txt', 'sequencing_summary_160.txt', 'sequencing_summary_161.txt', 'sequencing_summary_162.txt', 'sequencing_summary_163.txt', 'sequencing_summary_164.txt', 'sequencing_summary_165.txt', 'sequencing_summary_166.txt', 'sequencing_summary_167.txt', 'sequencing_summary_168.txt', 'sequencing_summary_169.txt', 'sequencing_summary_16.txt', 'sequencing_summary_170.txt', 'sequencing_summary_171.txt', 'sequencing_summary_172.txt', 'sequencing_summary_173.txt', 'sequencing_summary_174.txt', 'sequencing_summary_175.txt', 'sequencing_summary_176.txt', 'sequencing_summary_177.txt', 'sequencing_summary_178.txt', 'sequencing_summary_179.txt', 'sequencing_summary_17.txt', 'sequencing_summary_180.txt', 'sequencing_summary_181.txt', 'sequencing_summary_182.txt', 'sequencing_summary_183.txt', 'sequencing_summary_184.txt', 'sequencing_summary_185.txt', 'sequencing_summary_186.txt', 'sequencing_summary_187.txt', 'sequencing_summary_188.txt', 'sequencing_summary_189.txt', 'sequencing_summary_18.txt', 'sequencing_summary_190.txt', 'sequencing_summary_191.txt', 'sequencing_summary_192.txt', 'sequencing_summary_193.txt', 'sequencing_summary_194.txt', 'sequencing_summary_195.txt', 'sequencing_summary_196.txt', 'sequencing_summary_197.txt', 'sequencing_summary_198.txt', 'sequencing_summary_199.txt', 'sequencing_summary_19.txt', 'sequencing_summary_1.txt', 'sequencing_summary_200.txt', 'sequencing_summary_201.txt', 'sequencing_summary_202.txt', 'sequencing_summary_203.txt', 'sequencing_summary_204.txt', 'sequencing_summary_205.txt', 'sequencing_summary_206.txt', 'sequencing_summary_207.txt', 'sequencing_summary_208.txt', 'sequencing_summary_209.txt', 'sequencing_summary_20.txt', 'sequencing_summary_210.txt', 'sequencing_summary_211.txt', 'sequencing_summary_212.txt', 'sequencing_summary_213.txt', 'sequencing_summary_214.txt', 'sequencing_summary_215.txt', 'sequencing_summary_216.txt', 'sequencing_summary_217.txt', 'sequencing_summary_218.txt', 'sequencing_summary_219.txt', 'sequencing_summary_21.txt', 'sequencing_summary_220.txt', 'sequencing_summary_221.txt', 'sequencing_summary_222.txt', 'sequencing_summary_223.txt', 'sequencing_summary_224.txt', 'sequencing_summary_225.txt', 'sequencing_summary_226.txt', 'sequencing_summary_227.txt', 'sequencing_summary_228.txt', 'sequencing_summary_229.txt', 'sequencing_summary_22.txt', 'sequencing_summary_230.txt', 'sequencing_summary_231.txt', 'sequencing_summary_232.txt', 'sequencing_summary_233.txt', 'sequencing_summary_234.txt', 'sequencing_summary_235.txt', 'sequencing_summary_236.txt', 'sequencing_summary_237.txt', 'sequencing_summary_238.txt', 'sequencing_summary_239.txt', 'sequencing_summary_23.txt', 'sequencing_summary_240.txt', 'sequencing_summary_241.txt', 'sequencing_summary_242.txt', 'sequencing_summary_243.txt', 'sequencing_summary_244.txt', 'sequencing_summary_245.txt', 'sequencing_summary_24.txt', 'sequencing_summary_25.txt', 'sequencing_summary_26.txt', 'sequencing_summary_27.txt', 'sequencing_summary_28.txt', 'sequencing_summary_29.txt', 'sequencing_summary_2.txt', 'sequencing_summary_30.txt', 'sequencing_summary_31.txt', 'sequencing_summary_32.txt', 'sequencing_summary_33.txt', 'sequencing_summary_34.txt', 'sequencing_summary_35.txt', 'sequencing_summary_36.txt', 'sequencing_summary_37.txt', 'sequencing_summary_38.txt', 'sequencing_summary_39.txt', 'sequencing_summary_3.txt', 'sequencing_summary_40.txt', 'sequencing_summary_41.txt', 'sequencing_summary_42.txt', 'sequencing_summary_43.txt', 'sequencing_summary_44.txt', 'sequencing_summary_45.txt', 'sequencing_summary_46.txt', 'sequencing_summary_47.txt', 'sequencing_summary_48.txt', 'sequencing_summary_49.txt', 'sequencing_summary_4.txt', 'sequencing_summary_50.txt', 'sequencing_summary_51.txt', 'sequencing_summary_52.txt', 'sequencing_summary_53.txt', 'sequencing_summary_54.txt', 'sequencing_summary_55.txt', 'sequencing_summary_56.txt', 'sequencing_summary_57.txt', 'sequencing_summary_58.txt', 'sequencing_summary_59.txt', 'sequencing_summary_5.txt', 'sequencing_summary_60.txt', 'sequencing_summary_61.txt', 'sequencing_summary_62.txt', 'sequencing_summary_63.txt', 'sequencing_summary_64.txt', 'sequencing_summary_65.txt', 'sequencing_summary_66.txt', 'sequencing_summary_67.txt', 'sequencing_summary_68.txt', 'sequencing_summary_69.txt', 'sequencing_summary_6.txt', 'sequencing_summary_70.txt', 'sequencing_summary_71.txt', 'sequencing_summary_72.txt', 'sequencing_summary_73.txt', 'sequencing_summary_74.txt', 'sequencing_summary_75.txt', 'sequencing_summary_76.txt', 'sequencing_summary_77.txt', 'sequencing_summary_78.txt', 'sequencing_summary_79.txt', 'sequencing_summary_7.txt', 'sequencing_summary_80.txt', 'sequencing_summary_81.txt', 'sequencing_summary_82.txt', 'sequencing_summary_83.txt', 'sequencing_summary_84.txt', 'sequencing_summary_85.txt', 'sequencing_summary_86.txt', 'sequencing_summary_87.txt', 'sequencing_summary_88.txt', 'sequencing_summary_89.txt', 'sequencing_summary_8.txt', 'sequencing_summary_90.txt', 'sequencing_summary_91.txt', 'sequencing_summary_92.txt', 'sequencing_summary_93.txt', 'sequencing_summary_94.txt', 'sequencing_summary_95.txt', 'sequencing_summary_96.txt', 'sequencing_summary_97.txt', 'sequencing_summary_98.txt', 'sequencing_summary_99.txt', 'sequencing_summary_9.txt'], threads=4, title=None, verbose=False)
2019-03-01 08:31:00,524 Python version is: 3.5.6 |Anaconda, Inc.| (default, Aug 26 2018, 21:41:56) [GCC 7.3.0]
2019-03-01 08:31:00,526 Nanoplotter: valid output format png
2019-03-01 08:31:00,533 Nanoget: Collecting metrics from summary file sequencing_summary_0.txt for 1D sequencing
2019-03-01 08:31:00,534 Nanoget: Collecting metrics from summary file sequencing_summary_100.txt for 1D sequencing
2019-03-01 08:31:00,536 Nanoget: Collecting metrics from summary file sequencing_summary_101.txt for 1D sequencing
2019-03-01 08:31:00,537 Nanoget: Collecting metrics from summary file sequencing_summary_102.txt for 1D sequencing
2019-03-01 08:31:00,552 Nanoget: Finished collecting statistics from summary file sequencing_summary_0.txt
2019-03-01 08:31:00,556 Nanoget: Finished collecting statistics from summary file sequencing_summary_102.txt
2019-03-01 08:31:00,560 Nanoget: Finished collecting statistics from summary file sequencing_summary_100.txt
2019-03-01 08:31:00,563 Nanoget: Finished collecting statistics from summary file sequencing_summary_101.txt
2019-03-01 08:31:00,567 Reduced DataFrame memory usage from 1.8157958984375Mb to 0.9004373550415039Mb
2019-03-01 08:31:00,569 Nanoget: Collecting metrics from summary file sequencing_summary_103.txt for 1D sequencing
2019-03-01 08:31:00,572 Reduced DataFrame memory usage from 1.8157958984375Mb to 0.9004373550415039Mb
2019-03-01 08:31:00,574 Nanoget: Collecting metrics from summary file sequencing_summary_104.txt for 1D sequencing
2019-03-01 08:31:00,583 Reduced DataFrame memory usage from 1.8157958984375Mb to 0.9004373550415039Mb
2019-03-01 08:31:00,585 Nanoget: Collecting metrics from summary file sequencing_summary_105.txt for 1D sequencing
2019-03-01 08:31:00,586 Reduced DataFrame memory usage from 1.8157958984375Mb to 0.9004373550415039Mb
2019-03-01 08:31:00,587 Nanoget: Finished collecting statistics from summary file sequencing_summary_103.txt
2019-03-01 08:31:00,588 Nanoget: Collecting metrics from summary file sequencing_summary_106.txt for 1D sequencing
2019-03-01 08:31:00,591 Nanoget: Finished collecting statistics from summary file sequencing_summary_104.txt
2019-03-01 08:31:00,601 Reduced DataFrame memory usage from 1.8157958984375Mb to 0.9004373550415039Mb
2019-03-01 08:31:00,603 Nanoget: Collecting metrics from summary file sequencing_summary_107.txt for 1D sequencing
2019-03-01 08:31:00,603 Reduced DataFrame memory usage from 1.8157958984375Mb to 0.9004373550415039Mb
2019-03-01 08:31:00,605 Nanoget: Collecting metrics from summary file sequencing_summary_108.txt for 1D sequencing
2019-03-01 08:31:00,609 Nanoget: Finished collecting statistics from summary file sequencing_summary_105.txt
2019-03-01 08:31:00,611 Nanoget: Finished collecting statistics from summary file sequencing_summary_106.txt
2019-03-01 08:31:00,621 Nanoget: Finished collecting statistics from summary file sequencing_summary_107.txt
2019-03-01 08:31:00,622 Nanoget: Finished collecting statistics from summary file sequencing_summary_108.txt
2019-03-01 08:31:00,629 Reduced DataFrame memory usage from 1.8157958984375Mb to 0.9004373550415039Mb
2019-03-01 08:31:00,631 Nanoget: Collecting metrics from summary file sequencing_summary_109.txt for 1D sequencing
2019-03-01 08:31:00,632 Reduced DataFrame memory usage from 1.8157958984375Mb to 0.9004373550415039Mb
2019-03-01 08:31:00,634 Nanoget: Collecting metrics from summary file sequencing_summary_10.txt for 1D sequencing
2019-03-01 08:31:00,636 Reduced DataFrame memory usage from 1.8157958984375Mb to 0.9004373550415039Mb
2019-03-01 08:31:00,637 Reduced DataFrame memory usage from 1.8157958984375Mb to 0.9004373550415039Mb
2019-03-01 08:31:00,638 Nanoget: Collecting metrics from summary file sequencing_summary_110.txt for 1D sequencing
2019-03-01 08:31:00,640 Nanoget: Collecting metrics from summary file sequencing_summary_111.txt for 1D sequencing
2019-03-01 08:31:00,654 Nanoget: Finished collecting statistics from summary file sequencing_summary_109.txt
2019-03-01 08:31:00,657 Nanoget: Finished collecting statistics from summary file sequencing_summary_111.txt
2019-03-01 08:31:00,657 Nanoget: Finished collecting statistics from summary file sequencing_summary_110.txt
2019-03-01 08:31:00,657 Nanoget: Finished collecting statistics from summary file sequencing_summary_10.txt
2019-03-01 08:31:00,670 Reduced DataFrame memory usage from 1.8157958984375Mb to 0.9004373550415039Mb
2019-03-01 08:31:00,670 Reduced DataFrame memory usage from 1.8157958984375Mb to 0.9004373550415039Mb
2019-03-01 08:31:00,671 Nanoget: Collecting metrics from summary file sequencing_summary_112.txt for 1D sequencing
2019-03-01 08:31:00,673 Nanoget: Collecting metrics from summary file sequencing_summary_113.txt for 1D sequencing
2019-03-01 08:31:00,674 Reduced DataFrame memory usage from 1.8157958984375Mb to 0.9004373550415039Mb
2019-03-01 08:31:00,676 Nanoget: Collecting metrics from summary file sequencing_summary_114.txt for 1D sequencing
2019-03-01 08:31:00,677 Reduced DataFrame memory usage from 1.8157958984375Mb to 0.9004373550415039Mb
2019-03-01 08:31:00,679 Nanoget: Collecting metrics from summary file sequencing_summary_115.txt for 1D sequencing
2019-03-01 08:31:00,694 Nanoget: Finished collecting statistics from summary file sequencing_summary_112.txt
2019-03-01 08:31:00,696 Nanoget: Finished collecting statistics from summary file sequencing_summary_113.txt
2019-03-01 08:31:00,699 Nanoget: Finished collecting statistics from summary file sequencing_summary_114.txt
2019-03-01 08:31:00,702 Nanoget: Finished collecting statistics from summary file sequencing_summary_115.txt
2019-03-01 08:31:00,713 Reduced DataFrame memory usage from 1.8157958984375Mb to 0.9004373550415039Mb
2019-03-01 08:31:00,715 Nanoget: Collecting metrics from summary file sequencing_summary_116.txt for 1D sequencing
2019-03-01 08:31:00,715 Reduced DataFrame memory usage from 1.8157958984375Mb to 0.9004373550415039Mb
2019-03-01 08:31:00,718 Nanoget: Collecting metrics from summary file sequencing_summary_117.txt for 1D sequencing
2019-03-01 08:31:00,718 Reduced DataFrame memory usage from 1.8157958984375Mb to 0.9004373550415039Mb
2019-03-01 08:31:00,720 Nanoget: Collecting metrics from summary file sequencing_summary_118.txt for 1D sequencing
2019-03-01 08:31:00,721 Reduced DataFrame memory usage from 1.8157958984375Mb to 0.9004373550415039Mb
2019-03-01 08:31:00,723 Nanoget: Collecting metrics from summary file sequencing_summary_119.txt for 1D sequencing
2019-03-01 08:31:00,738 Nanoget: Finished collecting statistics from summary file sequencing_summary_116.txt
2019-03-01 08:31:00,741 Nanoget: Finished collecting statistics from summary file sequencing_summary_117.txt
2019-03-01 08:31:00,741 Nanoget: Finished collecting statistics from summary file sequencing_summary_118.txt
2019-03-01 08:31:00,743 Nanoget: Finished collecting statistics from summary file sequencing_summary_119.txt
2019-03-01 08:31:00,754 Reduced DataFrame memory usage from 1.8157958984375Mb to 0.9004373550415039Mb
2019-03-01 08:31:00,754 Reduced DataFrame memory usage from 1.8157958984375Mb to 0.9004373550415039Mb
2019-03-01 08:31:00,755 Reduced DataFrame memory usage from 1.8157958984375Mb to 0.9004373550415039Mb
2019-03-01 08:31:00,756 Reduced DataFrame memory usage from 1.8157958984375Mb to 0.9004373550415039Mb
2019-03-01 08:31:00,756 Nanoget: Collecting metrics from summary file sequencing_summary_11.txt for 1D sequencing
2019-03-01 08:31:00,758 Nanoget: Collecting metrics from summary file sequencing_summary_120.txt for 1D sequencing
2019-03-01 08:31:00,760 Nanoget: Collecting metrics from summary file sequencing_summary_121.txt for 1D sequencing
2019-03-01 08:31:00,762 Nanoget: Collecting metrics from summary file sequencing_summary_122.txt for 1D sequencing
2019-03-01 08:31:00,774 Nanoget: Finished collecting statistics from summary file sequencing_summary_11.txt
2019-03-01 08:31:00,774 Nanoget: Finished collecting statistics from summary file sequencing_summary_120.txt
2019-03-01 08:31:00,776 Nanoget: Finished collecting statistics from summary file sequencing_summary_121.txt
2019-03-01 08:31:00,778 Nanoget: Finished collecting statistics from summary file sequencing_summary_122.txt
2019-03-01 08:31:00,787 Reduced DataFrame memory usage from 1.8157958984375Mb to 0.9004373550415039Mb
2019-03-01 08:31:00,787 Reduced DataFrame memory usage from 1.8157958984375Mb to 0.9004373550415039Mb
2019-03-01 08:31:00,789 Nanoget: Collecting metrics from summary file sequencing_summary_123.txt for 1D sequencing
2019-03-01 08:31:00,789 Reduced DataFrame memory usage from 1.8157958984375Mb to 0.9004373550415039Mb
2019-03-01 08:31:00,791 Nanoget: Collecting metrics from summary file sequencing_summary_124.txt for 1D sequencing
2019-03-01 08:31:00,792 Reduced DataFrame memory usage from 1.8157958984375Mb to 0.9004373550415039Mb
2019-03-01 08:31:00,793 Nanoget: Collecting metrics from summary file sequencing_summary_125.txt for 1D sequencing
2019-03-01 08:31:00,795 Nanoget: Collecting metrics from summary file sequencing_summary_126.txt for 1D sequencing
2019-03-01 08:31:00,807 Nanoget: Finished collecting statistics from summary file sequencing_summary_124.txt
2019-03-01 08:31:00,807 Nanoget: Finished collecting statistics from summary file sequencing_summary_123.txt
2019-03-01 08:31:00,809 Nanoget: Finished collecting statistics from summary file sequencing_summary_125.txt
2019-03-01 08:31:00,811 Nanoget: Finished collecting statistics from summary file sequencing_summary_126.txt
2019-03-01 08:31:00,820 Reduced DataFrame memory usage from 1.8157958984375Mb to 0.9004373550415039Mb
2019-03-01 08:31:00,820 Reduced DataFrame memory usage from 1.8157958984375Mb to 0.9004373550415039Mb
2019-03-01 08:31:00,822 Nanoget: Collecting metrics from summary file sequencing_summary_127.txt for 1D sequencing
2019-03-01 08:31:00,823 Reduced DataFrame memory usage from 1.8157958984375Mb to 0.9004373550415039Mb
2019-03-01 08:31:00,824 Nanoget: Collecting metrics from summary file sequencing_summary_128.txt for 1D sequencing
2019-03-01 08:31:00,825 Reduced DataFrame memory usage from 1.8157958984375Mb to 0.9004373550415039Mb
2019-03-01 08:31:00,827 Nanoget: Collecting metrics from summary file sequencing_summary_129.txt for 1D sequencing
2019-03-01 08:31:00,829 Nanoget: Collecting metrics from summary file sequencing_summary_12.txt for 1D sequencing
2019-03-01 08:31:00,841 Nanoget: Finished collecting statistics from summary file sequencing_summary_127.txt
2019-03-01 08:31:00,841 Nanoget: Finished collecting statistics from summary file sequencing_summary_128.txt
2019-03-01 08:31:00,843 Nanoget: Finished collecting statistics from summary file sequencing_summary_129.txt
2019-03-01 08:31:00,845 Nanoget: Finished collecting statistics from summary file sequencing_summary_12.txt
2019-03-01 08:31:00,854 Reduced DataFrame memory usage from 1.8157958984375Mb to 0.9004373550415039Mb
2019-03-01 08:31:00,854 Reduced DataFrame memory usage from 1.8157958984375Mb to 0.9004373550415039Mb
2019-03-01 08:31:00,856 Nanoget: Collecting metrics from summary file sequencing_summary_130.txt for 1D sequencing
2019-03-01 08:31:00,856 Reduced DataFrame memory usage from 1.8157958984375Mb to 0.9004373550415039Mb
2019-03-01 08:31:00,858 Nanoget: Collecting metrics from summary file sequencing_summary_131.txt for 1D sequencing
2019-03-01 08:31:00,859 Reduced DataFrame memory usage from 1.8157958984375Mb to 0.9004373550415039Mb
2019-03-01 08:31:00,860 Nanoget: Collecting metrics from summary file sequencing_summary_132.txt for 1D sequencing
2019-03-01 08:31:00,862 Nanoget: Collecting metrics from summary file sequencing_summary_133.txt for 1D sequencing
2019-03-01 08:31:00,874 Nanoget: Finished collecting statistics from summary file sequencing_summary_130.txt
2019-03-01 08:31:00,874 Nanoget: Finished collecting statistics from summary file sequencing_summary_131.txt
2019-03-01 08:31:00,876 Nanoget: Finished collecting statistics from summary file sequencing_summary_132.txt
2019-03-01 08:31:00,879 Nanoget: Finished collecting statistics from summary file sequencing_summary_133.txt
2019-03-01 08:31:00,887 Reduced DataFrame memory usage from 1.8157958984375Mb to 0.9004373550415039Mb
2019-03-01 08:31:00,888 Reduced DataFrame memory usage from 1.8157958984375Mb to 0.9004373550415039Mb
2019-03-01 08:31:00,889 Nanoget: Collecting metrics from summary file sequencing_summary_134.txt for 1D sequencing
2019-03-01 08:31:00,889 Reduced DataFrame memory usage from 1.8157958984375Mb to 0.9004373550415039Mb
2019-03-01 08:31:00,891 Nanoget: Collecting metrics from summary file sequencing_summary_135.txt for 1D sequencing
2019-03-01 08:31:00,892 Reduced DataFrame memory usage from 1.8157958984375Mb to 0.9004373550415039Mb
2019-03-01 08:31:00,893 Nanoget: Collecting metrics from summary file sequencing_summary_136.txt for 1D sequencing
2019-03-01 08:31:00,894 Nanoget: Collecting metrics from summary file sequencing_summary_137.txt for 1D sequencing
2019-03-01 08:31:00,905 Nanoget: Finished collecting statistics from summary file sequencing_summary_134.txt
2019-03-01 08:31:00,911 Nanoget: Finished collecting statistics from summary file sequencing_summary_137.txt
2019-03-01 08:31:00,914 Nanoget: Finished collecting statistics from summary file sequencing_summary_135.txt
2019-03-01 08:31:00,916 Nanoget: Finished collecting statistics from summary file sequencing_summary_136.txt
2019-03-01 08:31:00,919 Reduced DataFrame memory usage from 1.8157958984375Mb to 0.9004373550415039Mb
2019-03-01 08:31:00,920 Nanoget: Collecting metrics from summary file sequencing_summary_138.txt for 1D sequencing
2019-03-01 08:31:00,925 Reduced DataFrame memory usage from 1.8157958984375Mb to 0.9004373550415039Mb
2019-03-01 08:31:00,926 Nanoget: Collecting metrics from summary file sequencing_summary_139.txt for 1D sequencing
2019-03-01 08:31:00,934 Reduced DataFrame memory usage from 1.8157958984375Mb to 0.9004373550415039Mb
2019-03-01 08:31:00,936 Reduced DataFrame memory usage from 1.8157958984375Mb to 0.9004373550415039Mb
2019-03-01 08:31:00,936 Nanoget: Collecting metrics from summary file sequencing_summary_13.txt for 1D sequencing
2019-03-01 08:31:00,937 Nanoget: Finished collecting statistics from summary file sequencing_summary_138.txt
2019-03-01 08:31:00,939 Nanoget: Collecting metrics from summary file sequencing_summary_140.txt for 1D sequencing
2019-03-01 08:31:00,944 Nanoget: Finished collecting statistics from summary file sequencing_summary_139.txt
2019-03-01 08:31:00,951 Reduced DataFrame memory usage from 1.8157958984375Mb to 0.9004373550415039Mb
2019-03-01 08:31:00,953 Nanoget: Collecting metrics from summary file sequencing_summary_141.txt for 1D sequencing
2019-03-01 08:31:00,958 Reduced DataFrame memory usage from 1.8157958984375Mb to 0.9004373550415039Mb
2019-03-01 08:31:00,959 Nanoget: Collecting metrics from summary file sequencing_summary_142.txt for 1D sequencing
2019-03-01 08:31:00,960 Nanoget: Finished collecting statistics from summary file sequencing_summary_13.txt
2019-03-01 08:31:00,962 Nanoget: Finished collecting statistics from summary file sequencing_summary_140.txt
2019-03-01 08:31:00,969 Nanoget: Finished collecting statistics from summary file sequencing_summary_141.txt
2019-03-01 08:31:00,976 Nanoget: Finished collecting statistics from summary file sequencing_summary_142.txt
2019-03-01 08:31:00,980 Reduced DataFrame memory usage from 1.8157958984375Mb to 0.9004373550415039Mb
2019-03-01 08:31:00,982 Reduced DataFrame memory usage from 1.8157958984375Mb to 0.9004373550415039Mb
2019-03-01 08:31:00,982 Nanoget: Collecting metrics from summary file sequencing_summary_143.txt for 1D sequencing
2019-03-01 08:31:00,982 Reduced DataFrame memory usage from 1.8157958984375Mb to 0.9004373550415039Mb
2019-03-01 08:31:00,984 Nanoget: Collecting metrics from summary file sequencing_summary_144.txt for 1D sequencing
2019-03-01 08:31:00,986 Nanoget: Collecting metrics from summary file sequencing_summary_145.txt for 1D sequencing
2019-03-01 08:31:00,991 Reduced DataFrame memory usage from 1.8157958984375Mb to 0.9004373550415039Mb
2019-03-01 08:31:00,993 Nanoget: Collecting metrics from summary file sequencing_summary_146.txt for 1D sequencing
2019-03-01 08:31:01,000 Nanoget: Finished collecting statistics from summary file sequencing_summary_144.txt
2019-03-01 08:31:01,005 Nanoget: Finished collecting statistics from summary file sequencing_summary_143.txt
2019-03-01 08:31:01,009 Nanoget: Finished collecting statistics from summary file sequencing_summary_145.txt
2019-03-01 08:31:01,010 Nanoget: Finished collecting statistics from summary file sequencing_summary_146.txt
2019-03-01 08:31:01,014 Reduced DataFrame memory usage from 1.8157958984375Mb to 0.9004373550415039Mb
2019-03-01 08:31:01,016 Nanoget: Collecting metrics from summary file sequencing_summary_147.txt for 1D sequencing
2019-03-01 08:31:01,023 Reduced DataFrame memory usage from 1.8157958984375Mb to 0.9004373550415039Mb
2019-03-01 08:31:01,025 Reduced DataFrame memory usage from 1.8157958984375Mb to 0.9004373550415039Mb
2019-03-01 08:31:01,025 Nanoget: Collecting metrics from summary file sequencing_summary_148.txt for 1D sequencing
2019-03-01 08:31:01,027 Nanoget: Collecting metrics from summary file sequencing_summary_149.txt for 1D sequencing
2019-03-01 08:31:01,029 Reduced DataFrame memory usage from 1.8157958984375Mb to 0.9004373550415039Mb
2019-03-01 08:31:01,032 Nanoget: Collecting metrics from summary file sequencing_summary_14.txt for 1D sequencing
2019-03-01 08:31:01,032 Nanoget: Finished collecting statistics from summary file sequencing_summary_147.txt
2019-03-01 08:31:01,042 Nanoget: Finished collecting statistics from summary file sequencing_summary_148.txt
2019-03-01 08:31:01,046 Reduced DataFrame memory usage from 1.8157958984375Mb to 0.9004373550415039Mb
2019-03-01 08:31:01,047 Nanoget: Collecting metrics from summary file sequencing_summary_150.txt for 1D sequencing
2019-03-01 08:31:01,050 Nanoget: Finished collecting statistics from summary file sequencing_summary_149.txt
2019-03-01 08:31:01,055 Nanoget: Finished collecting statistics from summary file sequencing_summary_14.txt
2019-03-01 08:31:01,056 Reduced DataFrame memory usage from 1.8157958984375Mb to 0.9004373550415039Mb
2019-03-01 08:31:01,058 Nanoget: Collecting metrics from summary file sequencing_summary_151.txt for 1D sequencing
2019-03-01 08:31:01,064 Nanoget: Finished collecting statistics from summary file sequencing_summary_150.txt
2019-03-01 08:31:01,070 Reduced DataFrame memory usage from 1.8157958984375Mb to 0.9004373550415039Mb
2019-03-01 08:31:01,072 Nanoget: Collecting metrics from summary file sequencing_summary_152.txt for 1D sequencing
2019-03-01 08:31:01,075 Reduced DataFrame memory usage from 1.8157958984375Mb to 0.9004373550415039Mb
2019-03-01 08:31:01,075 Nanoget: Finished collecting statistics from summary file sequencing_summary_151.txt
2019-03-01 08:31:01,077 Reduced DataFrame memory usage from 1.8157958984375Mb to 0.9004373550415039Mb
2019-03-01 08:31:01,077 Nanoget: Collecting metrics from summary file sequencing_summary_153.txt for 1D sequencing
2019-03-01 08:31:01,078 Nanoget: Collecting metrics from summary file sequencing_summary_154.txt for 1D sequencing
2019-03-01 08:31:01,090 Reduced DataFrame memory usage from 1.8157958984375Mb to 0.9004373550415039Mb
2019-03-01 08:31:01,092 Nanoget: Collecting metrics from summary file sequencing_summary_155.txt for 1D sequencing
2019-03-01 08:31:01,095 Nanoget: Finished collecting statistics from summary file sequencing_summary_154.txt
2019-03-01 08:31:01,095 Nanoget: Finished collecting statistics from summary file sequencing_summary_152.txt
2019-03-01 08:31:01,100 Nanoget: Finished collecting statistics from summary file sequencing_summary_153.txt
2019-03-01 08:31:01,108 Reduced DataFrame memory usage from 1.8157958984375Mb to 0.9004373550415039Mb
2019-03-01 08:31:01,109 Nanoget: Finished collecting statistics from summary file sequencing_summary_155.txt
2019-03-01 08:31:01,110 Nanoget: Collecting metrics from summary file sequencing_summary_156.txt for 1D sequencing
2019-03-01 08:31:01,115 Reduced DataFrame memory usage from 1.8157958984375Mb to 0.9004373550415039Mb
2019-03-01 08:31:01,117 Nanoget: Collecting metrics from summary file sequencing_summary_157.txt for 1D sequencing
2019-03-01 08:31:01,120 Reduced DataFrame memory usage from 1.8157958984375Mb to 0.9004373550415039Mb
2019-03-01 08:31:01,122 Nanoget: Collecting metrics from summary file sequencing_summary_158.txt for 1D sequencing
2019-03-01 08:31:01,123 Reduced DataFrame memory usage from 1.8157958984375Mb to 0.9004373550415039Mb
2019-03-01 08:31:01,125 Nanoget: Collecting metrics from summary file sequencing_summary_159.txt for 1D sequencing
2019-03-01 08:31:01,127 Nanoget: Finished collecting statistics from summary file sequencing_summary_156.txt
2019-03-01 08:31:01,140 Reduced DataFrame memory usage from 1.8157958984375Mb to 0.9004373550415039Mb
2019-03-01 08:31:01,141 Nanoget: Finished collecting statistics from summary file sequencing_summary_157.txt
2019-03-01 08:31:01,142 Nanoget: Collecting metrics from summary file sequencing_summary_15.txt for 1D sequencing
2019-03-01 08:31:01,142 Nanoget: Finished collecting statistics from summary file sequencing_summary_159.txt
2019-03-01 08:31:01,146 Nanoget: Finished collecting statistics from summary file sequencing_summary_158.txt
2019-03-01 08:31:01,156 Reduced DataFrame memory usage from 1.8157958984375Mb to 0.9004373550415039Mb
2019-03-01 08:31:01,158 Nanoget: Collecting metrics from summary file sequencing_summary_160.txt for 1D sequencing
2019-03-01 08:31:01,159 Nanoget: Finished collecting statistics from summary file sequencing_summary_15.txt
2019-03-01 08:31:01,161 Reduced DataFrame memory usage from 1.8157958984375Mb to 0.9004373550415039Mb
2019-03-01 08:31:01,163 Nanoget: Collecting metrics from summary file sequencing_summary_161.txt for 1D sequencing
2019-03-01 08:31:01,166 Reduced DataFrame memory usage from 1.8157958984375Mb to 0.9004373550415039Mb
2019-03-01 08:31:01,168 Nanoget: Collecting metrics from summary file sequencing_summary_162.txt for 1D sequencing
2019-03-01 08:31:01,174 Reduced DataFrame memory usage from 1.8157958984375Mb to 0.9004373550415039Mb
2019-03-01 08:31:01,174 Nanoget: Finished collecting statistics from summary file sequencing_summary_160.txt
2019-03-01 08:31:01,175 Nanoget: Collecting metrics from summary file sequencing_summary_163.txt for 1D sequencing
2019-03-01 08:31:01,185 Nanoget: Finished collecting statistics from summary file sequencing_summary_161.txt
2019-03-01 08:31:01,189 Reduced DataFrame memory usage from 1.8157958984375Mb to 0.9004373550415039Mb
2019-03-01 08:31:01,190 Nanoget: Collecting metrics from summary file sequencing_summary_164.txt for 1D sequencing
2019-03-01 08:31:01,192 Nanoget: Finished collecting statistics from summary file sequencing_summary_162.txt
2019-03-01 08:31:01,193 Nanoget: Finished collecting statistics from summary file sequencing_summary_163.txt
2019-03-01 08:31:01,206 Reduced DataFrame memory usage from 1.8157958984375Mb to 0.9004373550415039Mb
2019-03-01 08:31:01,206 Reduced DataFrame memory usage from 1.8157958984375Mb to 0.9004373550415039Mb
2019-03-01 08:31:01,207 Nanoget: Finished collecting statistics from summary file sequencing_summary_164.txt
2019-03-01 08:31:01,207 Nanoget: Collecting metrics from summary file sequencing_summary_165.txt for 1D sequencing
2019-03-01 08:31:01,209 Nanoget: Collecting metrics from summary file sequencing_summary_166.txt for 1D sequencing
2019-03-01 08:31:01,210 Reduced DataFrame memory usage from 1.8157958984375Mb to 0.9004373550415039Mb
2019-03-01 08:31:01,212 Nanoget: Collecting metrics from summary file sequencing_summary_167.txt for 1D sequencing
2019-03-01 08:31:01,222 Reduced DataFrame memory usage from 1.8157958984375Mb to 0.9004373550415039Mb
2019-03-01 08:31:01,224 Nanoget: Collecting metrics from summary file sequencing_summary_168.txt for 1D sequencing
2019-03-01 08:31:01,226 Nanoget: Finished collecting statistics from summary file sequencing_summary_165.txt
2019-03-01 08:31:01,228 Nanoget: Finished collecting statistics from summary file sequencing_summary_166.txt
2019-03-01 08:31:01,229 Nanoget: Finished collecting statistics from summary file sequencing_summary_167.txt
2019-03-01 08:31:01,239 Reduced DataFrame memory usage from 1.8157958984375Mb to 0.9004373550415039Mb
2019-03-01 08:31:01,240 Nanoget: Finished collecting statistics from summary file sequencing_summary_168.txt
2019-03-01 08:31:01,241 Nanoget: Collecting metrics from summary file sequencing_summary_169.txt for 1D sequencing
2019-03-01 08:31:01,241 Reduced DataFrame memory usage from 1.8157958984375Mb to 0.9004373550415039Mb
2019-03-01 08:31:01,242 Reduced DataFrame memory usage from 1.8157958984375Mb to 0.9004373550415039Mb
2019-03-01 08:31:01,244 Nanoget: Collecting metrics from summary file sequencing_summary_16.txt for 1D sequencing
2019-03-01 08:31:01,246 Nanoget: Collecting metrics from summary file sequencing_summary_170.txt for 1D sequencing
2019-03-01 08:31:01,257 Reduced DataFrame memory usage from 1.8157958984375Mb to 0.9004373550415039Mb
2019-03-01 08:31:01,259 Nanoget: Collecting metrics from summary file sequencing_summary_171.txt for 1D sequencing
2019-03-01 08:31:01,260 Nanoget: Finished collecting statistics from summary file sequencing_summary_16.txt
2019-03-01 08:31:01,260 Nanoget: Finished collecting statistics from summary file sequencing_summary_169.txt
2019-03-01 08:31:01,266 Nanoget: Finished collecting statistics from summary file sequencing_summary_170.txt
2019-03-01 08:31:01,273 Reduced DataFrame memory usage from 1.8157958984375Mb to 0.9004373550415039Mb
2019-03-01 08:31:01,273 Reduced DataFrame memory usage from 1.8157958984375Mb to 0.9004373550415039Mb
2019-03-01 08:31:01,275 Nanoget: Collecting metrics from summary file sequencing_summary_172.txt for 1D sequencing
2019-03-01 08:31:01,276 Nanoget: Finished collecting statistics from summary file sequencing_summary_171.txt
2019-03-01 08:31:01,277 Nanoget: Collecting metrics from summary file sequencing_summary_173.txt for 1D sequencing
2019-03-01 08:31:01,280 Reduced DataFrame memory usage from 1.8157958984375Mb to 0.9004373550415039Mb
2019-03-01 08:31:01,282 Nanoget: Collecting metrics from summary file sequencing_summary_174.txt for 1D sequencing
2019-03-01 08:31:01,291 Reduced DataFrame memory usage from 1.8157958984375Mb to 0.9004373550415039Mb
2019-03-01 08:31:01,291 Nanoget: Finished collecting statistics from summary file sequencing_summary_172.txt
2019-03-01 08:31:01,293 Nanoget: Collecting metrics from summary file sequencing_summary_175.txt for 1D sequencing
2019-03-01 08:31:01,295 Nanoget: Finished collecting statistics from summary file sequencing_summary_173.txt
2019-03-01 08:31:01,299 Nanoget: Finished collecting statistics from summary file sequencing_summary_174.txt
2019-03-01 08:31:01,305 Reduced DataFrame memory usage from 1.8157958984375Mb to 0.9156961441040039Mb
2019-03-01 08:31:01,307 Nanoget: Collecting metrics from summary file sequencing_summary_176.txt for 1D sequencing
2019-03-01 08:31:01,309 Reduced DataFrame memory usage from 1.8157958984375Mb to 0.9004373550415039Mb
2019-03-01 08:31:01,310 Nanoget: Finished collecting statistics from summary file sequencing_summary_175.txt
2019-03-01 08:31:01,311 Nanoget: Collecting metrics from summary file sequencing_summary_177.txt for 1D sequencing
2019-03-01 08:31:01,314 Reduced DataFrame memory usage from 1.8157958984375Mb to 0.9004373550415039Mb
2019-03-01 08:31:01,316 Nanoget: Collecting metrics from summary file sequencing_summary_178.txt for 1D sequencing
2019-03-01 08:31:01,323 Nanoget: Finished collecting statistics from summary file sequencing_summary_176.txt
2019-03-01 08:31:01,325 Reduced DataFrame memory usage from 1.8157958984375Mb to 0.9004373550415039Mb
2019-03-01 08:31:01,327 Nanoget: Collecting metrics from summary file sequencing_summary_179.txt for 1D sequencing
2019-03-01 08:31:01,329 Nanoget: Finished collecting statistics from summary file sequencing_summary_177.txt
2019-03-01 08:31:01,336 Nanoget: Finished collecting statistics from summary file sequencing_summary_178.txt
2019-03-01 08:31:01,337 Reduced DataFrame memory usage from 1.8157958984375Mb to 0.9004373550415039Mb
2019-03-01 08:31:01,338 Nanoget: Collecting metrics from summary file sequencing_summary_17.txt for 1D sequencing
2019-03-01 08:31:01,343 Reduced DataFrame memory usage from 1.8157958984375Mb to 0.9004373550415039Mb
2019-03-01 08:31:01,345 Nanoget: Finished collecting statistics from summary file sequencing_summary_179.txt
2019-03-01 08:31:01,345 Nanoget: Collecting metrics from summary file sequencing_summary_180.txt for 1D sequencing
2019-03-01 08:31:01,350 Reduced DataFrame memory usage from 1.8157958984375Mb to 0.9004373550415039Mb
2019-03-01 08:31:01,352 Nanoget: Collecting metrics from summary file sequencing_summary_181.txt for 1D sequencing
2019-03-01 08:31:01,355 Nanoget: Finished collecting statistics from summary file sequencing_summary_17.txt
2019-03-01 08:31:01,360 Reduced DataFrame memory usage from 1.8157958984375Mb to 0.9004373550415039Mb
2019-03-01 08:31:01,362 Nanoget: Collecting metrics from summary file sequencing_summary_182.txt for 1D sequencing
2019-03-01 08:31:01,363 Nanoget: Finished collecting statistics from summary file sequencing_summary_180.txt
2019-03-01 08:31:01,369 Reduced DataFrame memory usage from 1.8157958984375Mb to 0.9004373550415039Mb
2019-03-01 08:31:01,369 Nanoget: Finished collecting statistics from summary file sequencing_summary_181.txt
2019-03-01 08:31:01,370 Nanoget: Collecting metrics from summary file sequencing_summary_183.txt for 1D sequencing
2019-03-01 08:31:01,378 Reduced DataFrame memory usage from 1.8157958984375Mb to 0.9004373550415039Mb
2019-03-01 08:31:01,379 Nanoget: Finished collecting statistics from summary file sequencing_summary_182.txt
2019-03-01 08:31:01,380 Nanoget: Collecting metrics from summary file sequencing_summary_184.txt for 1D sequencing
2019-03-01 08:31:01,383 Reduced DataFrame memory usage from 1.8157958984375Mb to 0.9004373550415039Mb
2019-03-01 08:31:01,385 Nanoget: Collecting metrics from summary file sequencing_summary_185.txt for 1D sequencing
2019-03-01 08:31:01,387 Nanoget: Finished collecting statistics from summary file sequencing_summary_183.txt
2019-03-01 08:31:01,394 Reduced DataFrame memory usage from 1.8157958984375Mb to 0.9004373550415039Mb
2019-03-01 08:31:01,396 Nanoget: Collecting metrics from summary file sequencing_summary_186.txt for 1D sequencing
2019-03-01 08:31:01,397 Nanoget: Finished collecting statistics from summary file sequencing_summary_184.txt
2019-03-01 08:31:01,401 Reduced DataFrame memory usage from 1.8157958984375Mb to 0.9004373550415039Mb
2019-03-01 08:31:01,403 Nanoget: Finished collecting statistics from summary file sequencing_summary_185.txt
2019-03-01 08:31:01,403 Nanoget: Collecting metrics from summary file sequencing_summary_187.txt for 1D sequencing
2019-03-01 08:31:01,411 Reduced DataFrame memory usage from 1.8157958984375Mb to 0.9004373550415039Mb
2019-03-01 08:31:01,412 Nanoget: Collecting metrics from summary file sequencing_summary_188.txt for 1D sequencing
2019-03-01 08:31:01,414 Nanoget: Finished collecting statistics from summary file sequencing_summary_186.txt
2019-03-01 08:31:01,418 Reduced DataFrame memory usage from 1.8157958984375Mb to 0.9004373550415039Mb
2019-03-01 08:31:01,420 Nanoget: Collecting metrics from summary file sequencing_summary_189.txt for 1D sequencing
2019-03-01 08:31:01,420 Nanoget: Finished collecting statistics from summary file sequencing_summary_187.txt
2019-03-01 08:31:01,429 Nanoget: Finished collecting statistics from summary file sequencing_summary_188.txt
2019-03-01 08:31:01,429 Reduced DataFrame memory usage from 1.8157958984375Mb to 0.9004373550415039Mb
2019-03-01 08:31:01,431 Nanoget: Collecting metrics from summary file sequencing_summary_18.txt for 1D sequencing
2019-03-01 08:31:01,434 Reduced DataFrame memory usage from 1.8157958984375Mb to 0.9004373550415039Mb
2019-03-01 08:31:01,436 Nanoget: Collecting metrics from summary file sequencing_summary_190.txt for 1D sequencing
2019-03-01 08:31:01,438 Nanoget: Finished collecting statistics from summary file sequencing_summary_189.txt
2019-03-01 08:31:01,442 Reduced DataFrame memory usage from 1.8157958984375Mb to 0.9004373550415039Mb
2019-03-01 08:31:01,444 Nanoget: Collecting metrics from summary file sequencing_summary_191.txt for 1D sequencing
2019-03-01 08:31:01,448 Nanoget: Finished collecting statistics from summary file sequencing_summary_18.txt
2019-03-01 08:31:01,452 Nanoget: Finished collecting statistics from summary file sequencing_summary_190.txt
2019-03-01 08:31:01,452 Reduced DataFrame memory usage from 1.8157958984375Mb to 0.9004373550415039Mb
2019-03-01 08:31:01,454 Nanoget: Collecting metrics from summary file sequencing_summary_192.txt for 1D sequencing
2019-03-01 08:31:01,460 Nanoget: Finished collecting statistics from summary file sequencing_summary_191.txt
2019-03-01 08:31:01,463 Reduced DataFrame memory usage from 1.8157958984375Mb to 0.9004373550415039Mb
2019-03-01 08:31:01,465 Nanoget: Collecting metrics from summary file sequencing_summary_193.txt for 1D sequencing
2019-03-01 08:31:01,466 Reduced DataFrame memory usage from 1.8157958984375Mb to 0.9004373550415039Mb
2019-03-01 08:31:01,468 Nanoget: Collecting metrics from summary file sequencing_summary_194.txt for 1D sequencing
2019-03-01 08:31:01,473 Nanoget: Finished collecting statistics from summary file sequencing_summary_192.txt
2019-03-01 08:31:01,474 Reduced DataFrame memory usage from 1.8157958984375Mb to 0.9004373550415039Mb
2019-03-01 08:31:01,476 Nanoget: Collecting metrics from summary file sequencing_summary_195.txt for 1D sequencing
2019-03-01 08:31:01,482 Nanoget: Finished collecting statistics from summary file sequencing_summary_193.txt
2019-03-01 08:31:01,485 Nanoget: Finished collecting statistics from summary file sequencing_summary_194.txt
2019-03-01 08:31:01,487 Reduced DataFrame memory usage from 1.8157958984375Mb to 0.9004373550415039Mb
2019-03-01 08:31:01,489 Nanoget: Collecting metrics from summary file sequencing_summary_196.txt for 1D sequencing
2019-03-01 08:31:01,493 Nanoget: Finished collecting statistics from summary file sequencing_summary_195.txt
2019-03-01 08:31:01,497 Reduced DataFrame memory usage from 1.8157958984375Mb to 0.9004373550415039Mb
2019-03-01 08:31:01,498 Nanoget: Collecting metrics from summary file sequencing_summary_197.txt for 1D sequencing
2019-03-01 08:31:01,499 Reduced DataFrame memory usage from 1.8157958984375Mb to 0.9004373550415039Mb
2019-03-01 08:31:01,501 Nanoget: Collecting metrics from summary file sequencing_summary_198.txt for 1D sequencing
2019-03-01 08:31:01,507 Reduced DataFrame memory usage from 1.8157958984375Mb to 0.9004373550415039Mb
2019-03-01 08:31:01,508 Nanoget: Finished collecting statistics from summary file sequencing_summary_196.txt
2019-03-01 08:31:01,508 Nanoget: Collecting metrics from summary file sequencing_summary_199.txt for 1D sequencing
2019-03-01 08:31:01,516 Nanoget: Finished collecting statistics from summary file sequencing_summary_197.txt
2019-03-01 08:31:01,517 Nanoget: Finished collecting statistics from summary file sequencing_summary_198.txt
2019-03-01 08:31:01,522 Reduced DataFrame memory usage from 1.8157958984375Mb to 0.9004373550415039Mb
2019-03-01 08:31:01,524 Nanoget: Collecting metrics from summary file sequencing_summary_19.txt for 1D sequencing
2019-03-01 08:31:01,525 Nanoget: Finished collecting statistics from summary file sequencing_summary_199.txt
2019-03-01 08:31:01,531 Reduced DataFrame memory usage from 1.8157958984375Mb to 0.9004373550415039Mb
2019-03-01 08:31:01,531 Reduced DataFrame memory usage from 1.8157958984375Mb to 0.9004373550415039Mb
2019-03-01 08:31:01,532 Nanoget: Collecting metrics from summary file sequencing_summary_1.txt for 1D sequencing
2019-03-01 08:31:01,534 Nanoget: Collecting metrics from summary file sequencing_summary_200.txt for 1D sequencing
2019-03-01 08:31:01,539 Reduced DataFrame memory usage from 1.8157958984375Mb to 0.9004373550415039Mb
2019-03-01 08:31:01,541 Nanoget: Collecting metrics from summary file sequencing_summary_201.txt for 1D sequencing
2019-03-01 08:31:01,543 Nanoget: Finished collecting statistics from summary file sequencing_summary_19.txt
2019-03-01 08:31:01,550 Nanoget: Finished collecting statistics from summary file sequencing_summary_1.txt
2019-03-01 08:31:01,551 Nanoget: Finished collecting statistics from summary file sequencing_summary_200.txt
2019-03-01 08:31:01,557 Reduced DataFrame memory usage from 1.8157958984375Mb to 0.9004373550415039Mb
2019-03-01 08:31:01,557 Nanoget: Finished collecting statistics from summary file sequencing_summary_201.txt
2019-03-01 08:31:01,558 Nanoget: Collecting metrics from summary file sequencing_summary_202.txt for 1D sequencing
2019-03-01 08:31:01,564 Reduced DataFrame memory usage from 1.8157958984375Mb to 0.9004373550415039Mb
2019-03-01 08:31:01,565 Reduced DataFrame memory usage from 1.8157958984375Mb to 0.9004373550415039Mb
2019-03-01 08:31:01,566 Nanoget: Collecting metrics from summary file sequencing_summary_203.txt for 1D sequencing
2019-03-01 08:31:01,568 Nanoget: Collecting metrics from summary file sequencing_summary_204.txt for 1D sequencing
2019-03-01 08:31:01,571 Reduced DataFrame memory usage from 1.8157958984375Mb to 0.9004373550415039Mb
2019-03-01 08:31:01,573 Nanoget: Collecting metrics from summary file sequencing_summary_205.txt for 1D sequencing
2019-03-01 08:31:01,577 Nanoget: Finished collecting statistics from summary file sequencing_summary_202.txt
2019-03-01 08:31:01,583 Nanoget: Finished collecting statistics from summary file sequencing_summary_203.txt
2019-03-01 08:31:01,585 Nanoget: Finished collecting statistics from summary file sequencing_summary_204.txt
2019-03-01 08:31:01,589 Nanoget: Finished collecting statistics from summary file sequencing_summary_205.txt
2019-03-01 08:31:01,591 Reduced DataFrame memory usage from 1.8157958984375Mb to 0.9004373550415039Mb
2019-03-01 08:31:01,592 Nanoget: Collecting metrics from summary file sequencing_summary_206.txt for 1D sequencing
2019-03-01 08:31:01,597 Reduced DataFrame memory usage from 1.8157958984375Mb to 0.9004373550415039Mb
2019-03-01 08:31:01,599 Reduced DataFrame memory usage from 1.8157958984375Mb to 0.9004373550415039Mb
2019-03-01 08:31:01,599 Nanoget: Collecting metrics from summary file sequencing_summary_207.txt for 1D sequencing
2019-03-01 08:31:01,601 Nanoget: Collecting metrics from summary file sequencing_summary_208.txt for 1D sequencing
2019-03-01 08:31:01,603 Reduced DataFrame memory usage from 1.8157958984375Mb to 0.9004373550415039Mb
2019-03-01 08:31:01,605 Nanoget: Collecting metrics from summary file sequencing_summary_209.txt for 1D sequencing
2019-03-01 08:31:01,611 Nanoget: Finished collecting statistics from summary file sequencing_summary_206.txt
2019-03-01 08:31:01,616 Nanoget: Finished collecting statistics from summary file sequencing_summary_207.txt
2019-03-01 08:31:01,618 Nanoget: Finished collecting statistics from summary file sequencing_summary_208.txt
2019-03-01 08:31:01,622 Nanoget: Finished collecting statistics from summary file sequencing_summary_209.txt
2019-03-01 08:31:01,624 Reduced DataFrame memory usage from 1.8157958984375Mb to 0.9004373550415039Mb
2019-03-01 08:31:01,626 Nanoget: Collecting metrics from summary file sequencing_summary_20.txt for 1D sequencing
2019-03-01 08:31:01,630 Reduced DataFrame memory usage from 1.8157958984375Mb to 0.9004373550415039Mb
2019-03-01 08:31:01,632 Reduced DataFrame memory usage from 1.8157958984375Mb to 0.9004373550415039Mb
2019-03-01 08:31:01,632 Nanoget: Collecting metrics from summary file sequencing_summary_210.txt for 1D sequencing
2019-03-01 08:31:01,634 Nanoget: Collecting metrics from summary file sequencing_summary_211.txt for 1D sequencing
2019-03-01 08:31:01,635 Reduced DataFrame memory usage from 1.8157958984375Mb to 0.9004373550415039Mb
2019-03-01 08:31:01,637 Nanoget: Collecting metrics from summary file sequencing_summary_212.txt for 1D sequencing
2019-03-01 08:31:01,644 Nanoget: Finished collecting statistics from summary file sequencing_summary_20.txt
2019-03-01 08:31:01,650 Nanoget: Finished collecting statistics from summary file sequencing_summary_210.txt
2019-03-01 08:31:01,651 Nanoget: Finished collecting statistics from summary file sequencing_summary_211.txt
2019-03-01 08:31:01,654 Nanoget: Finished collecting statistics from summary file sequencing_summary_212.txt
2019-03-01 08:31:01,658 Reduced DataFrame memory usage from 1.8157958984375Mb to 0.9004373550415039Mb
2019-03-01 08:31:01,659 Nanoget: Collecting metrics from summary file sequencing_summary_213.txt for 1D sequencing
2019-03-01 08:31:01,664 Reduced DataFrame memory usage from 1.8157958984375Mb to 0.9004373550415039Mb
2019-03-01 08:31:01,665 Reduced DataFrame memory usage from 1.8157958984375Mb to 0.9004373550415039Mb
2019-03-01 08:31:01,666 Nanoget: Collecting metrics from summary file sequencing_summary_214.txt for 1D sequencing
2019-03-01 08:31:01,667 Reduced DataFrame memory usage from 1.8157958984375Mb to 0.9004373550415039Mb
2019-03-01 08:31:01,668 Nanoget: Collecting metrics from summary file sequencing_summary_215.txt for 1D sequencing
2019-03-01 08:31:01,670 Nanoget: Collecting metrics from summary file sequencing_summary_216.txt for 1D sequencing
2019-03-01 08:31:01,678 Nanoget: Finished collecting statistics from summary file sequencing_summary_213.txt
2019-03-01 08:31:01,683 Nanoget: Finished collecting statistics from summary file sequencing_summary_214.txt
2019-03-01 08:31:01,685 Nanoget: Finished collecting statistics from summary file sequencing_summary_215.txt
2019-03-01 08:31:01,687 Nanoget: Finished collecting statistics from summary file sequencing_summary_216.txt
2019-03-01 08:31:01,691 Reduced DataFrame memory usage from 1.8157958984375Mb to 0.9004373550415039Mb
2019-03-01 08:31:01,693 Nanoget: Collecting metrics from summary file sequencing_summary_217.txt for 1D sequencing
2019-03-01 08:31:01,697 Reduced DataFrame memory usage from 1.8157958984375Mb to 0.9004373550415039Mb
2019-03-01 08:31:01,698 Reduced DataFrame memory usage from 1.8157958984375Mb to 0.9004373550415039Mb
2019-03-01 08:31:01,698 Nanoget: Collecting metrics from summary file sequencing_summary_218.txt for 1D sequencing
2019-03-01 08:31:01,700 Reduced DataFrame memory usage from 1.8157958984375Mb to 0.9004373550415039Mb
2019-03-01 08:31:01,701 Nanoget: Collecting metrics from summary file sequencing_summary_219.txt for 1D sequencing
2019-03-01 08:31:01,703 Nanoget: Collecting metrics from summary file sequencing_summary_21.txt for 1D sequencing
2019-03-01 08:31:01,711 Nanoget: Finished collecting statistics from summary file sequencing_summary_217.txt
2019-03-01 08:31:01,715 Nanoget: Finished collecting statistics from summary file sequencing_summary_218.txt
2019-03-01 08:31:01,717 Nanoget: Finished collecting statistics from summary file sequencing_summary_219.txt
2019-03-01 08:31:01,719 Nanoget: Finished collecting statistics from summary file sequencing_summary_21.txt
2019-03-01 08:31:01,724 Reduced DataFrame memory usage from 1.8157958984375Mb to 0.9004373550415039Mb
2019-03-01 08:31:01,726 Nanoget: Collecting metrics from summary file sequencing_summary_220.txt for 1D sequencing
2019-03-01 08:31:01,729 Reduced DataFrame memory usage from 1.8157958984375Mb to 0.9004373550415039Mb
2019-03-01 08:31:01,730 Nanoget: Collecting metrics from summary file sequencing_summary_221.txt for 1D sequencing
2019-03-01 08:31:01,731 Reduced DataFrame memory usage from 1.8157958984375Mb to 0.9004373550415039Mb
2019-03-01 08:31:01,733 Nanoget: Collecting metrics from summary file sequencing_summary_222.txt for 1D sequencing
2019-03-01 08:31:01,735 Reduced DataFrame memory usage from 1.8157958984375Mb to 0.9004373550415039Mb
2019-03-01 08:31:01,736 Nanoget: Collecting metrics from summary file sequencing_summary_223.txt for 1D sequencing
2019-03-01 08:31:01,742 Nanoget: Finished collecting statistics from summary file sequencing_summary_220.txt
2019-03-01 08:31:01,747 Nanoget: Finished collecting statistics from summary file sequencing_summary_221.txt
2019-03-01 08:31:01,749 Nanoget: Finished collecting statistics from summary file sequencing_summary_222.txt
2019-03-01 08:31:01,753 Nanoget: Finished collecting statistics from summary file sequencing_summary_223.txt
2019-03-01 08:31:01,756 Reduced DataFrame memory usage from 1.8157958984375Mb to 0.9004373550415039Mb
2019-03-01 08:31:01,758 Nanoget: Collecting metrics from summary file sequencing_summary_224.txt for 1D sequencing
2019-03-01 08:31:01,761 Reduced DataFrame memory usage from 1.8157958984375Mb to 0.9004373550415039Mb
2019-03-01 08:31:01,762 Nanoget: Collecting metrics from summary file sequencing_summary_225.txt for 1D sequencing
2019-03-01 08:31:01,762 Reduced DataFrame memory usage from 1.8157958984375Mb to 0.9004373550415039Mb
2019-03-01 08:31:01,765 Nanoget: Collecting metrics from summary file sequencing_summary_226.txt for 1D sequencing
2019-03-01 08:31:01,768 Reduced DataFrame memory usage from 1.8157958984375Mb to 0.9004373550415039Mb
2019-03-01 08:31:01,770 Nanoget: Collecting metrics from summary file sequencing_summary_227.txt for 1D sequencing
2019-03-01 08:31:01,774 Nanoget: Finished collecting statistics from summary file sequencing_summary_224.txt
2019-03-01 08:31:01,779 Nanoget: Finished collecting statistics from summary file sequencing_summary_225.txt
2019-03-01 08:31:01,782 Nanoget: Finished collecting statistics from summary file sequencing_summary_226.txt
2019-03-01 08:31:01,786 Nanoget: Finished collecting statistics from summary file sequencing_summary_227.txt
2019-03-01 08:31:01,788 Reduced DataFrame memory usage from 1.8157958984375Mb to 0.9004373550415039Mb
2019-03-01 08:31:01,790 Nanoget: Collecting metrics from summary file sequencing_summary_228.txt for 1D sequencing
2019-03-01 08:31:01,793 Reduced DataFrame memory usage from 1.8157958984375Mb to 0.9004373550415039Mb
2019-03-01 08:31:01,794 Nanoget: Collecting metrics from summary file sequencing_summary_229.txt for 1D sequencing
2019-03-01 08:31:01,797 Reduced DataFrame memory usage from 1.8157958984375Mb to 0.9004373550415039Mb
2019-03-01 08:31:01,799 Nanoget: Collecting metrics from summary file sequencing_summary_22.txt for 1D sequencing
2019-03-01 08:31:01,800 Reduced DataFrame memory usage from 1.8157958984375Mb to 0.9004373550415039Mb
2019-03-01 08:31:01,801 Nanoget: Collecting metrics from summary file sequencing_summary_230.txt for 1D sequencing
2019-03-01 08:31:01,806 Nanoget: Finished collecting statistics from summary file sequencing_summary_228.txt
2019-03-01 08:31:01,811 Nanoget: Finished collecting statistics from summary file sequencing_summary_229.txt
2019-03-01 08:31:01,816 Nanoget: Finished collecting statistics from summary file sequencing_summary_22.txt
2019-03-01 08:31:01,818 Nanoget: Finished collecting statistics from summary file sequencing_summary_230.txt
2019-03-01 08:31:01,820 Reduced DataFrame memory usage from 1.8157958984375Mb to 0.9004373550415039Mb
2019-03-01 08:31:01,822 Nanoget: Collecting metrics from summary file sequencing_summary_231.txt for 1D sequencing
2019-03-01 08:31:01,825 Reduced DataFrame memory usage from 1.8157958984375Mb to 0.9004373550415039Mb
2019-03-01 08:31:01,827 Nanoget: Collecting metrics from summary file sequencing_summary_232.txt for 1D sequencing
2019-03-01 08:31:01,832 Reduced DataFrame memory usage from 1.8157958984375Mb to 0.9004373550415039Mb
2019-03-01 08:31:01,832 Reduced DataFrame memory usage from 1.8157958984375Mb to 0.9004373550415039Mb
2019-03-01 08:31:01,834 Nanoget: Collecting metrics from summary file sequencing_summary_233.txt for 1D sequencing
2019-03-01 08:31:01,836 Nanoget: Collecting metrics from summary file sequencing_summary_234.txt for 1D sequencing
2019-03-01 08:31:01,839 Nanoget: Finished collecting statistics from summary file sequencing_summary_231.txt
2019-03-01 08:31:01,845 Nanoget: Finished collecting statistics from summary file sequencing_summary_232.txt
2019-03-01 08:31:01,850 Nanoget: Finished collecting statistics from summary file sequencing_summary_233.txt
2019-03-01 08:31:01,853 Nanoget: Finished collecting statistics from summary file sequencing_summary_234.txt
2019-03-01 08:31:01,853 Reduced DataFrame memory usage from 1.8157958984375Mb to 0.9004373550415039Mb
2019-03-01 08:31:01,854 Nanoget: Collecting metrics from summary file sequencing_summary_235.txt for 1D sequencing
2019-03-01 08:31:01,859 Reduced DataFrame memory usage from 1.8157958984375Mb to 0.9004373550415039Mb
2019-03-01 08:31:01,861 Nanoget: Collecting metrics from summary file sequencing_summary_236.txt for 1D sequencing
2019-03-01 08:31:01,864 Reduced DataFrame memory usage from 1.8157958984375Mb to 0.9156961441040039Mb
2019-03-01 08:31:01,865 Nanoget: Collecting metrics from summary file sequencing_summary_237.txt for 1D sequencing
2019-03-01 08:31:01,867 Reduced DataFrame memory usage from 1.8157958984375Mb to 0.9004373550415039Mb
2019-03-01 08:31:01,869 Nanoget: Collecting metrics from summary file sequencing_summary_238.txt for 1D sequencing
2019-03-01 08:31:01,872 Nanoget: Finished collecting statistics from summary file sequencing_summary_235.txt
2019-03-01 08:31:01,879 Nanoget: Finished collecting statistics from summary file sequencing_summary_236.txt
2019-03-01 08:31:01,882 Nanoget: Finished collecting statistics from summary file sequencing_summary_237.txt
2019-03-01 08:31:01,885 Reduced DataFrame memory usage from 1.8157958984375Mb to 0.9004373550415039Mb
2019-03-01 08:31:01,885 Nanoget: Finished collecting statistics from summary file sequencing_summary_238.txt
2019-03-01 08:31:01,887 Nanoget: Collecting metrics from summary file sequencing_summary_239.txt for 1D sequencing
2019-03-01 08:31:01,893 Reduced DataFrame memory usage from 1.8157958984375Mb to 0.9004373550415039Mb
2019-03-01 08:31:01,895 Reduced DataFrame memory usage from 1.8157958984375Mb to 0.9004373550415039Mb
2019-03-01 08:31:01,895 Nanoget: Collecting metrics from summary file sequencing_summary_23.txt for 1D sequencing
2019-03-01 08:31:01,897 Nanoget: Collecting metrics from summary file sequencing_summary_240.txt for 1D sequencing
2019-03-01 08:31:01,900 Reduced DataFrame memory usage from 1.8157958984375Mb to 0.9004373550415039Mb
2019-03-01 08:31:01,902 Nanoget: Collecting metrics from summary file sequencing_summary_241.txt for 1D sequencing
2019-03-01 08:31:01,904 Nanoget: Finished collecting statistics from summary file sequencing_summary_239.txt
2019-03-01 08:31:01,913 Nanoget: Finished collecting statistics from summary file sequencing_summary_23.txt
2019-03-01 08:31:01,914 Nanoget: Finished collecting statistics from summary file sequencing_summary_240.txt
2019-03-01 08:31:01,918 Reduced DataFrame memory usage from 1.8157958984375Mb to 0.9004373550415039Mb
2019-03-01 08:31:01,918 Nanoget: Finished collecting statistics from summary file sequencing_summary_241.txt
2019-03-01 08:31:01,919 Nanoget: Collecting metrics from summary file sequencing_summary_242.txt for 1D sequencing
2019-03-01 08:31:01,927 Reduced DataFrame memory usage from 1.8157958984375Mb to 0.9004373550415039Mb
2019-03-01 08:31:01,927 Reduced DataFrame memory usage from 1.8157958984375Mb to 0.9004373550415039Mb
2019-03-01 08:31:01,929 Nanoget: Collecting metrics from summary file sequencing_summary_243.txt for 1D sequencing
2019-03-01 08:31:01,930 Nanoget: Collecting metrics from summary file sequencing_summary_244.txt for 1D sequencing
2019-03-01 08:31:01,933 Reduced DataFrame memory usage from 1.8157958984375Mb to 0.9004373550415039Mb
2019-03-01 08:31:01,934 Nanoget: Collecting metrics from summary file sequencing_summary_245.txt for 1D sequencing
2019-03-01 08:31:01,936 Nanoget: Finished collecting statistics from summary file sequencing_summary_242.txt
2019-03-01 08:31:01,938 Nanoget: Finished collecting statistics from summary file sequencing_summary_245.txt
2019-03-01 08:31:01,945 Nanoget: Finished collecting statistics from summary file sequencing_summary_243.txt
2019-03-01 08:31:01,947 Reduced DataFrame memory usage from 0.1488943099975586Mb to 0.0765848159790039Mb
2019-03-01 08:31:01,947 Nanoget: Collecting metrics from summary file sequencing_summary_24.txt for 1D sequencing
2019-03-01 08:31:01,948 Nanoget: Finished collecting statistics from summary file sequencing_summary_244.txt
2019-03-01 08:31:01,950 Reduced DataFrame memory usage from 1.8157958984375Mb to 0.9004373550415039Mb
2019-03-01 08:31:01,951 Nanoget: Collecting metrics from summary file sequencing_summary_25.txt for 1D sequencing
2019-03-01 08:31:01,958 Reduced DataFrame memory usage from 1.8157958984375Mb to 0.9004373550415039Mb
2019-03-01 08:31:01,960 Nanoget: Collecting metrics from summary file sequencing_summary_26.txt for 1D sequencing
2019-03-01 08:31:01,963 Reduced DataFrame memory usage from 1.8157958984375Mb to 0.9004373550415039Mb
2019-03-01 08:31:01,965 Nanoget: Collecting metrics from summary file sequencing_summary_27.txt for 1D sequencing
2019-03-01 08:31:01,965 Nanoget: Finished collecting statistics from summary file sequencing_summary_24.txt
2019-03-01 08:31:01,968 Nanoget: Finished collecting statistics from summary file sequencing_summary_25.txt
2019-03-01 08:31:01,976 Nanoget: Finished collecting statistics from summary file sequencing_summary_26.txt
2019-03-01 08:31:01,979 Reduced DataFrame memory usage from 1.8157958984375Mb to 0.9004373550415039Mb
2019-03-01 08:31:01,981 Nanoget: Collecting metrics from summary file sequencing_summary_28.txt for 1D sequencing
2019-03-01 08:31:01,982 Reduced DataFrame memory usage from 1.8157958984375Mb to 0.9004373550415039Mb
2019-03-01 08:31:01,982 Nanoget: Finished collecting statistics from summary file sequencing_summary_27.txt
2019-03-01 08:31:01,983 Nanoget: Collecting metrics from summary file sequencing_summary_29.txt for 1D sequencing
2019-03-01 08:31:01,990 Reduced DataFrame memory usage from 1.8157958984375Mb to 0.9004373550415039Mb
2019-03-01 08:31:01,991 Nanoget: Collecting metrics from summary file sequencing_summary_2.txt for 1D sequencing
2019-03-01 08:31:01,997 Nanoget: Finished collecting statistics from summary file sequencing_summary_28.txt
2019-03-01 08:31:01,998 Reduced DataFrame memory usage from 1.8157958984375Mb to 0.9004373550415039Mb
2019-03-01 08:31:01,999 Nanoget: Collecting metrics from summary file sequencing_summary_30.txt for 1D sequencing
2019-03-01 08:31:02,000 Nanoget: Finished collecting statistics from summary file sequencing_summary_29.txt
2019-03-01 08:31:02,008 Nanoget: Finished collecting statistics from summary file sequencing_summary_2.txt
2019-03-01 08:31:02,011 Reduced DataFrame memory usage from 1.8157958984375Mb to 0.9004373550415039Mb
2019-03-01 08:31:02,013 Nanoget: Collecting metrics from summary file sequencing_summary_31.txt for 1D sequencing
2019-03-01 08:31:02,014 Reduced DataFrame memory usage from 1.8157958984375Mb to 0.9004373550415039Mb
2019-03-01 08:31:02,016 Nanoget: Collecting metrics from summary file sequencing_summary_32.txt for 1D sequencing
2019-03-01 08:31:02,018 Nanoget: Finished collecting statistics from summary file sequencing_summary_30.txt
2019-03-01 08:31:02,022 Reduced DataFrame memory usage from 1.8157958984375Mb to 0.9004373550415039Mb
2019-03-01 08:31:02,023 Nanoget: Collecting metrics from summary file sequencing_summary_33.txt for 1D sequencing
2019-03-01 08:31:02,029 Nanoget: Finished collecting statistics from summary file sequencing_summary_31.txt
2019-03-01 08:31:02,032 Reduced DataFrame memory usage from 1.8157958984375Mb to 0.9004373550415039Mb
2019-03-01 08:31:02,032 Nanoget: Finished collecting statistics from summary file sequencing_summary_32.txt
2019-03-01 08:31:02,034 Nanoget: Collecting metrics from summary file sequencing_summary_34.txt for 1D sequencing
2019-03-01 08:31:02,040 Nanoget: Finished collecting statistics from summary file sequencing_summary_33.txt
2019-03-01 08:31:02,043 Reduced DataFrame memory usage from 1.8157958984375Mb to 0.9004373550415039Mb
2019-03-01 08:31:02,045 Nanoget: Collecting metrics from summary file sequencing_summary_35.txt for 1D sequencing
2019-03-01 08:31:02,046 Reduced DataFrame memory usage from 1.8157958984375Mb to 0.9004373550415039Mb
2019-03-01 08:31:02,047 Nanoget: Collecting metrics from summary file sequencing_summary_36.txt for 1D sequencing
2019-03-01 08:31:02,052 Nanoget: Finished collecting statistics from summary file sequencing_summary_34.txt
2019-03-01 08:31:02,054 Reduced DataFrame memory usage from 1.8157958984375Mb to 0.9004373550415039Mb
2019-03-01 08:31:02,056 Nanoget: Collecting metrics from summary file sequencing_summary_37.txt for 1D sequencing
2019-03-01 08:31:02,062 Nanoget: Finished collecting statistics from summary file sequencing_summary_35.txt
2019-03-01 08:31:02,064 Nanoget: Finished collecting statistics from summary file sequencing_summary_36.txt
2019-03-01 08:31:02,067 Reduced DataFrame memory usage from 1.8157958984375Mb to 0.9004373550415039Mb
2019-03-01 08:31:02,068 Nanoget: Collecting metrics from summary file sequencing_summary_38.txt for 1D sequencing
2019-03-01 08:31:02,073 Nanoget: Finished collecting statistics from summary file sequencing_summary_37.txt
2019-03-01 08:31:02,075 Reduced DataFrame memory usage from 1.8157958984375Mb to 0.9004373550415039Mb
2019-03-01 08:31:02,077 Nanoget: Collecting metrics from summary file sequencing_summary_39.txt for 1D sequencing
2019-03-01 08:31:02,078 Reduced DataFrame memory usage from 1.8157958984375Mb to 0.9004373550415039Mb
2019-03-01 08:31:02,079 Nanoget: Collecting metrics from summary file sequencing_summary_3.txt for 1D sequencing
2019-03-01 08:31:02,086 Nanoget: Finished collecting statistics from summary file sequencing_summary_38.txt
2019-03-01 08:31:02,086 Reduced DataFrame memory usage from 1.8157958984375Mb to 0.9004373550415039Mb
2019-03-01 08:31:02,088 Nanoget: Collecting metrics from summary file sequencing_summary_40.txt for 1D sequencing
2019-03-01 08:31:02,094 Nanoget: Finished collecting statistics from summary file sequencing_summary_39.txt
2019-03-01 08:31:02,096 Nanoget: Finished collecting statistics from summary file sequencing_summary_3.txt
2019-03-01 08:31:02,101 Reduced DataFrame memory usage from 1.8157958984375Mb to 0.9004373550415039Mb
2019-03-01 08:31:02,102 Nanoget: Collecting metrics from summary file sequencing_summary_41.txt for 1D sequencing
2019-03-01 08:31:02,105 Nanoget: Finished collecting statistics from summary file sequencing_summary_40.txt
2019-03-01 08:31:02,107 Reduced DataFrame memory usage from 1.8157958984375Mb to 0.9004373550415039Mb
2019-03-01 08:31:02,109 Nanoget: Collecting metrics from summary file sequencing_summary_42.txt for 1D sequencing
2019-03-01 08:31:02,109 Reduced DataFrame memory usage from 1.8157958984375Mb to 0.9004373550415039Mb
2019-03-01 08:31:02,111 Nanoget: Collecting metrics from summary file sequencing_summary_43.txt for 1D sequencing
2019-03-01 08:31:02,119 Reduced DataFrame memory usage from 1.8157958984375Mb to 0.9004373550415039Mb
2019-03-01 08:31:02,120 Nanoget: Collecting metrics from summary file sequencing_summary_44.txt for 1D sequencing
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2019-03-01 08:31:02,135 Reduced DataFrame memory usage from 1.8157958984375Mb to 0.9004373550415039Mb
2019-03-01 08:31:02,137 Nanoget: Collecting metrics from summary file sequencing_summary_45.txt for 1D sequencing
2019-03-01 08:31:02,138 Nanoget: Finished collecting statistics from summary file sequencing_summary_44.txt
2019-03-01 08:31:02,139 Reduced DataFrame memory usage from 1.8157958984375Mb to 0.9004373550415039Mb
2019-03-01 08:31:02,141 Nanoget: Collecting metrics from summary file sequencing_summary_46.txt for 1D sequencing
2019-03-01 08:31:02,144 Reduced DataFrame memory usage from 1.8157958984375Mb to 0.9004373550415039Mb
2019-03-01 08:31:02,146 Nanoget: Collecting metrics from summary file sequencing_summary_47.txt for 1D sequencing
2019-03-01 08:31:02,152 Reduced DataFrame memory usage from 1.8157958984375Mb to 0.9004373550415039Mb
2019-03-01 08:31:02,153 Nanoget: Collecting metrics from summary file sequencing_summary_48.txt for 1D sequencing
2019-03-01 08:31:02,158 Nanoget: Finished collecting statistics from summary file sequencing_summary_46.txt
2019-03-01 08:31:02,161 Nanoget: Finished collecting statistics from summary file sequencing_summary_45.txt
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2019-03-01 08:31:02,171 Reduced DataFrame memory usage from 1.8157958984375Mb to 0.9004373550415039Mb
2019-03-01 08:31:02,173 Nanoget: Collecting metrics from summary file sequencing_summary_49.txt for 1D sequencing
2019-03-01 08:31:02,182 Reduced DataFrame memory usage from 1.8157958984375Mb to 0.9004373550415039Mb
2019-03-01 08:31:02,183 Reduced DataFrame memory usage from 1.8157958984375Mb to 0.9156961441040039Mb
2019-03-01 08:31:02,184 Nanoget: Collecting metrics from summary file sequencing_summary_4.txt for 1D sequencing
2019-03-01 08:31:02,186 Nanoget: Collecting metrics from summary file sequencing_summary_50.txt for 1D sequencing
2019-03-01 08:31:02,189 Reduced DataFrame memory usage from 1.8157958984375Mb to 0.9004373550415039Mb
2019-03-01 08:31:02,189 Nanoget: Finished collecting statistics from summary file sequencing_summary_49.txt
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2019-03-01 08:31:02,202 Nanoget: Finished collecting statistics from summary file sequencing_summary_50.txt
2019-03-01 08:31:02,203 Reduced DataFrame memory usage from 1.8157958984375Mb to 0.9004373550415039Mb
2019-03-01 08:31:02,204 Nanoget: Collecting metrics from summary file sequencing_summary_52.txt for 1D sequencing
2019-03-01 08:31:02,207 Nanoget: Finished collecting statistics from summary file sequencing_summary_4.txt
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2019-03-01 08:31:02,215 Reduced DataFrame memory usage from 1.8157958984375Mb to 0.9004373550415039Mb
2019-03-01 08:31:02,217 Nanoget: Collecting metrics from summary file sequencing_summary_53.txt for 1D sequencing
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2019-03-01 08:31:02,227 Reduced DataFrame memory usage from 1.8157958984375Mb to 0.9004373550415039Mb
2019-03-01 08:31:02,230 Nanoget: Collecting metrics from summary file sequencing_summary_54.txt for 1D sequencing
2019-03-01 08:31:02,234 Nanoget: Finished collecting statistics from summary file sequencing_summary_53.txt
2019-03-01 08:31:02,234 Reduced DataFrame memory usage from 1.8157958984375Mb to 0.9156961441040039Mb
2019-03-01 08:31:02,235 Reduced DataFrame memory usage from 1.8157958984375Mb to 0.9004373550415039Mb
2019-03-01 08:31:02,236 Nanoget: Collecting metrics from summary file sequencing_summary_55.txt for 1D sequencing
2019-03-01 08:31:02,237 Nanoget: Collecting metrics from summary file sequencing_summary_56.txt for 1D sequencing
2019-03-01 08:31:02,247 Reduced DataFrame memory usage from 1.8157958984375Mb to 0.9004373550415039Mb
2019-03-01 08:31:02,249 Nanoget: Collecting metrics from summary file sequencing_summary_57.txt for 1D sequencing
2019-03-01 08:31:02,252 Nanoget: Finished collecting statistics from summary file sequencing_summary_55.txt
2019-03-01 08:31:02,253 Nanoget: Finished collecting statistics from summary file sequencing_summary_54.txt
2019-03-01 08:31:02,260 Nanoget: Finished collecting statistics from summary file sequencing_summary_56.txt
2019-03-01 08:31:02,265 Nanoget: Finished collecting statistics from summary file sequencing_summary_57.txt
2019-03-01 08:31:02,265 Reduced DataFrame memory usage from 1.8157958984375Mb to 0.9004373550415039Mb
2019-03-01 08:31:02,267 Nanoget: Collecting metrics from summary file sequencing_summary_58.txt for 1D sequencing
2019-03-01 08:31:02,273 Reduced DataFrame memory usage from 1.8157958984375Mb to 0.9004373550415039Mb
2019-03-01 08:31:02,275 Nanoget: Collecting metrics from summary file sequencing_summary_59.txt for 1D sequencing
2019-03-01 08:31:02,278 Reduced DataFrame memory usage from 1.8157958984375Mb to 0.9004373550415039Mb
2019-03-01 08:31:02,280 Nanoget: Collecting metrics from summary file sequencing_summary_5.txt for 1D sequencing
2019-03-01 08:31:02,281 Reduced DataFrame memory usage from 1.8157958984375Mb to 0.9004373550415039Mb
2019-03-01 08:31:02,283 Nanoget: Collecting metrics from summary file sequencing_summary_60.txt for 1D sequencing
2019-03-01 08:31:02,284 Nanoget: Finished collecting statistics from summary file sequencing_summary_58.txt
2019-03-01 08:31:02,296 Nanoget: Finished collecting statistics from summary file sequencing_summary_5.txt
2019-03-01 08:31:02,297 Reduced DataFrame memory usage from 1.8157958984375Mb to 0.9004373550415039Mb
2019-03-01 08:31:02,298 Nanoget: Finished collecting statistics from summary file sequencing_summary_59.txt
2019-03-01 08:31:02,298 Nanoget: Collecting metrics from summary file sequencing_summary_61.txt for 1D sequencing
2019-03-01 08:31:02,306 Nanoget: Finished collecting statistics from summary file sequencing_summary_60.txt
2019-03-01 08:31:02,309 Reduced DataFrame memory usage from 1.8157958984375Mb to 0.9004373550415039Mb
2019-03-01 08:31:02,310 Nanoget: Collecting metrics from summary file sequencing_summary_62.txt for 1D sequencing
2019-03-01 08:31:02,315 Nanoget: Finished collecting statistics from summary file sequencing_summary_61.txt
2019-03-01 08:31:02,318 Reduced DataFrame memory usage from 1.8157958984375Mb to 0.9004373550415039Mb
2019-03-01 08:31:02,321 Nanoget: Collecting metrics from summary file sequencing_summary_63.txt for 1D sequencing
2019-03-01 08:31:02,326 Reduced DataFrame memory usage from 1.8157958984375Mb to 0.9004373550415039Mb
2019-03-01 08:31:02,327 Nanoget: Finished collecting statistics from summary file sequencing_summary_62.txt
2019-03-01 08:31:02,327 Reduced DataFrame memory usage from 1.8157958984375Mb to 0.9004373550415039Mb
2019-03-01 08:31:02,329 Nanoget: Collecting metrics from summary file sequencing_summary_64.txt for 1D sequencing
2019-03-01 08:31:02,330 Nanoget: Collecting metrics from summary file sequencing_summary_65.txt for 1D sequencing
2019-03-01 08:31:02,340 Reduced DataFrame memory usage from 1.8157958984375Mb to 0.9004373550415039Mb
2019-03-01 08:31:02,342 Nanoget: Collecting metrics from summary file sequencing_summary_66.txt for 1D sequencing
2019-03-01 08:31:02,344 Nanoget: Finished collecting statistics from summary file sequencing_summary_63.txt
2019-03-01 08:31:02,347 Nanoget: Finished collecting statistics from summary file sequencing_summary_65.txt
2019-03-01 08:31:02,352 Nanoget: Finished collecting statistics from summary file sequencing_summary_64.txt
2019-03-01 08:31:02,358 Nanoget: Finished collecting statistics from summary file sequencing_summary_66.txt
2019-03-01 08:31:02,360 Reduced DataFrame memory usage from 1.8157958984375Mb to 0.9004373550415039Mb
2019-03-01 08:31:02,361 Nanoget: Collecting metrics from summary file sequencing_summary_67.txt for 1D sequencing
2019-03-01 08:31:02,364 Reduced DataFrame memory usage from 1.8157958984375Mb to 0.9004373550415039Mb
2019-03-01 08:31:02,366 Nanoget: Collecting metrics from summary file sequencing_summary_68.txt for 1D sequencing
2019-03-01 08:31:02,371 Reduced DataFrame memory usage from 1.8157958984375Mb to 0.9004373550415039Mb
2019-03-01 08:31:02,372 Reduced DataFrame memory usage from 1.8157958984375Mb to 0.9004373550415039Mb
2019-03-01 08:31:02,373 Nanoget: Collecting metrics from summary file sequencing_summary_69.txt for 1D sequencing
2019-03-01 08:31:02,375 Nanoget: Collecting metrics from summary file sequencing_summary_6.txt for 1D sequencing
2019-03-01 08:31:02,378 Nanoget: Finished collecting statistics from summary file sequencing_summary_67.txt
2019-03-01 08:31:02,389 Nanoget: Finished collecting statistics from summary file sequencing_summary_69.txt
2019-03-01 08:31:02,389 Nanoget: Finished collecting statistics from summary file sequencing_summary_68.txt
2019-03-01 08:31:02,391 Reduced DataFrame memory usage from 1.8157958984375Mb to 0.9156961441040039Mb
2019-03-01 08:31:02,393 Nanoget: Collecting metrics from summary file sequencing_summary_70.txt for 1D sequencing
2019-03-01 08:31:02,398 Nanoget: Finished collecting statistics from summary file sequencing_summary_6.txt
2019-03-01 08:31:02,402 Reduced DataFrame memory usage from 1.8157958984375Mb to 0.9004373550415039Mb
2019-03-01 08:31:02,404 Nanoget: Collecting metrics from summary file sequencing_summary_71.txt for 1D sequencing
2019-03-01 08:31:02,409 Nanoget: Finished collecting statistics from summary file sequencing_summary_70.txt
2019-03-01 08:31:02,409 Reduced DataFrame memory usage from 1.8157958984375Mb to 0.9004373550415039Mb
2019-03-01 08:31:02,412 Nanoget: Collecting metrics from summary file sequencing_summary_72.txt for 1D sequencing
2019-03-01 08:31:02,418 Reduced DataFrame memory usage from 1.8157958984375Mb to 0.9004373550415039Mb
2019-03-01 08:31:02,420 Nanoget: Finished collecting statistics from summary file sequencing_summary_71.txt
2019-03-01 08:31:02,420 Nanoget: Collecting metrics from summary file sequencing_summary_73.txt for 1D sequencing
2019-03-01 08:31:02,423 Reduced DataFrame memory usage from 1.8157958984375Mb to 0.9004373550415039Mb
2019-03-01 08:31:02,424 Nanoget: Collecting metrics from summary file sequencing_summary_74.txt for 1D sequencing
2019-03-01 08:31:02,434 Reduced DataFrame memory usage from 1.8157958984375Mb to 0.9004373550415039Mb
2019-03-01 08:31:02,434 Nanoget: Finished collecting statistics from summary file sequencing_summary_72.txt
2019-03-01 08:31:02,436 Nanoget: Collecting metrics from summary file sequencing_summary_75.txt for 1D sequencing
2019-03-01 08:31:02,441 Nanoget: Finished collecting statistics from summary file sequencing_summary_74.txt
2019-03-01 08:31:02,444 Nanoget: Finished collecting statistics from summary file sequencing_summary_73.txt
2019-03-01 08:31:02,452 Nanoget: Finished collecting statistics from summary file sequencing_summary_75.txt
2019-03-01 08:31:02,454 Reduced DataFrame memory usage from 1.8157958984375Mb to 0.9004373550415039Mb
2019-03-01 08:31:02,454 Reduced DataFrame memory usage from 1.8157958984375Mb to 0.9004373550415039Mb
2019-03-01 08:31:02,455 Nanoget: Collecting metrics from summary file sequencing_summary_76.txt for 1D sequencing
2019-03-01 08:31:02,457 Nanoget: Collecting metrics from summary file sequencing_summary_77.txt for 1D sequencing
2019-03-01 08:31:02,462 Reduced DataFrame memory usage from 1.8157958984375Mb to 0.9004373550415039Mb
2019-03-01 08:31:02,464 Nanoget: Collecting metrics from summary file sequencing_summary_78.txt for 1D sequencing
2019-03-01 08:31:02,465 Reduced DataFrame memory usage from 1.8157958984375Mb to 0.9004373550415039Mb
2019-03-01 08:31:02,467 Nanoget: Collecting metrics from summary file sequencing_summary_79.txt for 1D sequencing
2019-03-01 08:31:02,472 Nanoget: Finished collecting statistics from summary file sequencing_summary_76.txt
2019-03-01 08:31:02,473 Nanoget: Finished collecting statistics from summary file sequencing_summary_77.txt
2019-03-01 08:31:02,481 Nanoget: Finished collecting statistics from summary file sequencing_summary_78.txt
2019-03-01 08:31:02,483 Nanoget: Finished collecting statistics from summary file sequencing_summary_79.txt
2019-03-01 08:31:02,486 Reduced DataFrame memory usage from 1.8157958984375Mb to 0.9004373550415039Mb
2019-03-01 08:31:02,487 Reduced DataFrame memory usage from 1.8157958984375Mb to 0.9004373550415039Mb
2019-03-01 08:31:02,487 Nanoget: Collecting metrics from summary file sequencing_summary_7.txt for 1D sequencing
2019-03-01 08:31:02,489 Nanoget: Collecting metrics from summary file sequencing_summary_80.txt for 1D sequencing
2019-03-01 08:31:02,496 Reduced DataFrame memory usage from 1.8157958984375Mb to 0.9156961441040039Mb
2019-03-01 08:31:02,496 Reduced DataFrame memory usage from 1.8157958984375Mb to 0.9004373550415039Mb
2019-03-01 08:31:02,498 Nanoget: Collecting metrics from summary file sequencing_summary_81.txt for 1D sequencing
2019-03-01 08:31:02,500 Nanoget: Collecting metrics from summary file sequencing_summary_82.txt for 1D sequencing
2019-03-01 08:31:02,504 Nanoget: Finished collecting statistics from summary file sequencing_summary_7.txt
2019-03-01 08:31:02,506 Nanoget: Finished collecting statistics from summary file sequencing_summary_80.txt
2019-03-01 08:31:02,515 Nanoget: Finished collecting statistics from summary file sequencing_summary_81.txt
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2019-03-01 08:31:02,517 Reduced DataFrame memory usage from 1.8157958984375Mb to 0.9004373550415039Mb
2019-03-01 08:31:02,519 Nanoget: Collecting metrics from summary file sequencing_summary_83.txt for 1D sequencing
2019-03-01 08:31:02,519 Reduced DataFrame memory usage from 1.8157958984375Mb to 0.9004373550415039Mb
2019-03-01 08:31:02,521 Nanoget: Collecting metrics from summary file sequencing_summary_84.txt for 1D sequencing
2019-03-01 08:31:02,530 Reduced DataFrame memory usage from 1.8157958984375Mb to 0.9004373550415039Mb
2019-03-01 08:31:02,530 Reduced DataFrame memory usage from 1.8157958984375Mb to 0.9004373550415039Mb
2019-03-01 08:31:02,532 Nanoget: Collecting metrics from summary file sequencing_summary_85.txt for 1D sequencing
2019-03-01 08:31:02,534 Nanoget: Collecting metrics from summary file sequencing_summary_86.txt for 1D sequencing
2019-03-01 08:31:02,536 Nanoget: Finished collecting statistics from summary file sequencing_summary_83.txt
2019-03-01 08:31:02,538 Nanoget: Finished collecting statistics from summary file sequencing_summary_84.txt
2019-03-01 08:31:02,549 Nanoget: Finished collecting statistics from summary file sequencing_summary_85.txt
2019-03-01 08:31:02,550 Reduced DataFrame memory usage from 1.8157958984375Mb to 0.9004373550415039Mb
2019-03-01 08:31:02,550 Nanoget: Finished collecting statistics from summary file sequencing_summary_86.txt
2019-03-01 08:31:02,551 Reduced DataFrame memory usage from 1.8157958984375Mb to 0.9004373550415039Mb
2019-03-01 08:31:02,551 Nanoget: Collecting metrics from summary file sequencing_summary_87.txt for 1D sequencing
2019-03-01 08:31:02,554 Nanoget: Collecting metrics from summary file sequencing_summary_88.txt for 1D sequencing
2019-03-01 08:31:02,564 Reduced DataFrame memory usage from 1.8157958984375Mb to 0.9004373550415039Mb
2019-03-01 08:31:02,564 Reduced DataFrame memory usage from 1.8157958984375Mb to 0.9004373550415039Mb
2019-03-01 08:31:02,566 Nanoget: Collecting metrics from summary file sequencing_summary_89.txt for 1D sequencing
2019-03-01 08:31:02,568 Nanoget: Collecting metrics from summary file sequencing_summary_8.txt for 1D sequencing
2019-03-01 08:31:02,569 Nanoget: Finished collecting statistics from summary file sequencing_summary_87.txt
2019-03-01 08:31:02,571 Nanoget: Finished collecting statistics from summary file sequencing_summary_88.txt
2019-03-01 08:31:02,582 Reduced DataFrame memory usage from 1.8157958984375Mb to 0.9004373550415039Mb
2019-03-01 08:31:02,583 Nanoget: Finished collecting statistics from summary file sequencing_summary_89.txt
2019-03-01 08:31:02,584 Nanoget: Collecting metrics from summary file sequencing_summary_90.txt for 1D sequencing
2019-03-01 08:31:02,584 Reduced DataFrame memory usage from 1.8157958984375Mb to 0.9004373550415039Mb
2019-03-01 08:31:02,585 Nanoget: Finished collecting statistics from summary file sequencing_summary_8.txt
2019-03-01 08:31:02,586 Nanoget: Collecting metrics from summary file sequencing_summary_91.txt for 1D sequencing
2019-03-01 08:31:02,598 Reduced DataFrame memory usage from 1.8157958984375Mb to 0.9004373550415039Mb
2019-03-01 08:31:02,598 Reduced DataFrame memory usage from 1.8157958984375Mb to 0.9004373550415039Mb
2019-03-01 08:31:02,600 Nanoget: Collecting metrics from summary file sequencing_summary_92.txt for 1D sequencing
2019-03-01 08:31:02,601 Nanoget: Finished collecting statistics from summary file sequencing_summary_90.txt
2019-03-01 08:31:02,602 Nanoget: Collecting metrics from summary file sequencing_summary_93.txt for 1D sequencing
2019-03-01 08:31:02,603 Nanoget: Finished collecting statistics from summary file sequencing_summary_91.txt
2019-03-01 08:31:02,614 Reduced DataFrame memory usage from 1.8157958984375Mb to 0.9004373550415039Mb
2019-03-01 08:31:02,616 Nanoget: Collecting metrics from summary file sequencing_summary_94.txt for 1D sequencing
2019-03-01 08:31:02,617 Reduced DataFrame memory usage from 1.8157958984375Mb to 0.9004373550415039Mb
2019-03-01 08:31:02,618 Nanoget: Finished collecting statistics from summary file sequencing_summary_92.txt
2019-03-01 08:31:02,619 Nanoget: Collecting metrics from summary file sequencing_summary_95.txt for 1D sequencing
2019-03-01 08:31:02,619 Nanoget: Finished collecting statistics from summary file sequencing_summary_93.txt
2019-03-01 08:31:02,632 Nanoget: Finished collecting statistics from summary file sequencing_summary_94.txt
2019-03-01 08:31:02,632 Reduced DataFrame memory usage from 1.8157958984375Mb to 0.9004373550415039Mb
2019-03-01 08:31:02,633 Reduced DataFrame memory usage from 1.8157958984375Mb to 0.9004373550415039Mb
2019-03-01 08:31:02,634 Nanoget: Collecting metrics from summary file sequencing_summary_96.txt for 1D sequencing
2019-03-01 08:31:02,635 Nanoget: Finished collecting statistics from summary file sequencing_summary_95.txt
2019-03-01 08:31:02,636 Nanoget: Collecting metrics from summary file sequencing_summary_97.txt for 1D sequencing
2019-03-01 08:31:02,646 Reduced DataFrame memory usage from 1.8157958984375Mb to 0.9156961441040039Mb
2019-03-01 08:31:02,648 Nanoget: Collecting metrics from summary file sequencing_summary_98.txt for 1D sequencing
2019-03-01 08:31:02,650 Reduced DataFrame memory usage from 1.8157958984375Mb to 0.9004373550415039Mb
2019-03-01 08:31:02,651 Nanoget: Collecting metrics from summary file sequencing_summary_99.txt for 1D sequencing
2019-03-01 08:31:02,653 Nanoget: Finished collecting statistics from summary file sequencing_summary_96.txt
2019-03-01 08:31:02,653 Nanoget: Finished collecting statistics from summary file sequencing_summary_97.txt
2019-03-01 08:31:02,664 Nanoget: Finished collecting statistics from summary file sequencing_summary_98.txt
2019-03-01 08:31:02,667 Reduced DataFrame memory usage from 1.8157958984375Mb to 0.9004373550415039Mb
2019-03-01 08:31:02,667 Reduced DataFrame memory usage from 1.8157958984375Mb to 0.9004373550415039Mb
2019-03-01 08:31:02,668 Nanoget: Finished collecting statistics from summary file sequencing_summary_99.txt
2019-03-01 08:31:02,669 Nanoget: Collecting metrics from summary file sequencing_summary_9.txt for 1D sequencing
2019-03-01 08:31:02,678 Reduced DataFrame memory usage from 1.8157958984375Mb to 0.9004373550415039Mb
2019-03-01 08:31:02,681 Reduced DataFrame memory usage from 1.8157958984375Mb to 0.9004373550415039Mb
2019-03-01 08:31:02,684 Nanoget: Finished collecting statistics from summary file sequencing_summary_9.txt
2019-03-01 08:31:02,697 Reduced DataFrame memory usage from 1.8157958984375Mb to 0.9004373550415039Mb
2019-03-01 08:31:03,290 Nanoget: Gathered all metrics of 1960656 reads
2019-03-01 08:31:03,421 index 0 is out of bounds for axis 0 with size 0
Traceback (most recent call last):
File "/home/grid/miniconda3/lib/python3.5/site-packages/nanoplot/NanoPlot.py", line 71, in main
settings["statsfile"] = [make_stats(datadf, settings, suffix="")]
File "/home/grid/miniconda3/lib/python3.5/site-packages/nanoplot/NanoPlot.py", line 280, in make_stats
outputfile=statsfile)
File "/home/grid/miniconda3/lib/python3.5/site-packages/nanomath/nanomath.py", line 135, in write_stats
stats = [Stats(df) for df in datadfs]
File "/home/grid/miniconda3/lib/python3.5/site-packages/nanomath/nanomath.py", line 135, in <listcomp>
stats = [Stats(df) for df in datadfs]
File "/home/grid/miniconda3/lib/python3.5/site-packages/nanomath/nanomath.py", line 35, in __init__
self.n50 = get_N50(np.sort(df["lengths"]))
File "/home/grid/miniconda3/lib/python3.5/site-packages/nanomath/nanomath.py", line 59, in get_N50
return readlengths[np.where(np.cumsum(readlengths) >= 0.5 * np.sum(readlengths))[0][0]]
IndexError: index 0 is out of bounds for axis 0 with size 0My compressed seq sum file is too large for email (150MB) can we do dropbox?
wdecoster
commented
5 years ago That is indeed the correct method for concatenating summary files. Dropbox is also okay for me.
tmmurtha
commented
5 years ago Files are on their way to your Dropbox.
wdecoster
commented
5 years ago The erroneous file is sequencing_summary_245.txt. If you look at the last line of it you'll see that it's incomplete. I don't know why, but that's either an issue when copying the files or with the basecaller. The issue is gone when running without that file.
By the way, I identified that file using ls *.txt | parallel -j 20 'NanoStat --summary {} > {.}.stats || echo {}' which will, in parallel, run NanoStat on each summary file. If it fails it will print the filename (using || to get a failure). NanoStat shares many things with NanoPlot, and the error was from the stats calculation.
tmmurtha
commented
5 years ago Thanks so much!!
wdecoster
commented
5 years ago Happy to help, let me know if you encounter other issues!
NanoPlot is up to date. Any help would be appreciated. Also, my other sequencing data from other runs at the same time work just fine in NanoPlot. This is the only one I'm having troubles with.